Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 256 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  148 bits (373), Expect = 2e-40
 Identities = 95/233 (40%), Positives = 133/233 (57%), Gaps = 30/233 (12%)

Query: 117 LMW-GLWTTLWLSVVSGILGLIIGLATGLCRLS----------SNPTLRDLSTIYVELVR 165
           L W G W TL ++VV  +LG   GL   L RL+          +   LR  +T+YV   R
Sbjct: 22  LFWQGAWMTLRMTVVCVLLGSSWGLCLALARLAQPRHAPWTWVARFFLRWPATVYVSFFR 81

Query: 166 GTPLLVQIFIFYFFIGTVL---------------NLSRE----FAGIAALSLFTGAYVAE 206
           GTPL VQI + +F +  V                 L +E     +G+ AL+L + AY++E
Sbjct: 82  GTPLFVQILLIHFAVMPVFIHPTSGLLIDGELARTLKQEHGALISGVVALTLNSAAYISE 141

Query: 207 IVRAGVQSITRGQNEAARSLGLSASQSMRHVVLPQAFKRVLPPLAGQFISLVKDTSLVSV 266
           + RAG+QSI+RGQ +A RSLG S +Q MR+VVLPQAF+R+LPPL    I+L+KDTSLVS 
Sbjct: 142 VFRAGIQSISRGQFDAGRSLGFSPAQVMRYVVLPQAFRRMLPPLGNNAIALLKDTSLVSA 201

Query: 267 IAITELLKSGREVITTSFSPFEILFCVAGLYLLINLPLSKMASRLERRLAQSD 319
           I + EL  + R V       +E    ++ +Y ++ L L+ +  RLE RLA+SD
Sbjct: 202 IGLAELAYAARTVAGAYARYWEPYLAISVIYWVMTLVLTTLLRRLEIRLARSD 254