Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 218 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  130 bits (327), Expect = 3e-35
 Identities = 70/200 (35%), Positives = 116/200 (58%), Gaps = 1/200 (0%)

Query: 117 LMWGLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDLSTIYVELVRGTPLLVQIFIF 176
           L+  +  TL LS ++ +LG + G    L R+S  P LR  + +Y+E ++G PLL+ +FI 
Sbjct: 14  LVQAIGWTLVLSAIAFVLGAVGGFGLMLARISPRPWLRWFAVVYIECIQGIPLLILLFIV 73

Query: 177 YFFIGTV-LNLSREFAGIAALSLFTGAYVAEIVRAGVQSITRGQNEAARSLGLSASQSMR 235
           YF +    L+L    A   A+ ++  AY+ +I R  ++++ + Q EA+  L LS  Q++R
Sbjct: 74  YFGLSVYGLSLPSLVAAGLAMMIYVSAYLGDIWRGCIEAMPKPQWEASECLALSRWQTLR 133

Query: 236 HVVLPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELLKSGREVITTSFSPFEILFCVAG 295
            V++PQA +  LPP  G  + ++K TSL SVI   EL ++G+ +  T F PF + F V  
Sbjct: 134 LVIIPQAVRLSLPPTVGFLVQIIKMTSLASVIGFVELTRAGQIINNTIFQPFLVFFLVGA 193

Query: 296 LYLLINLPLSKMASRLERRL 315
            Y  +  PLS+ +  +E++L
Sbjct: 194 FYFALCYPLSRWSEAMEKKL 213