Pairwise Alignments

Query, 788 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 645 a.a., Outer membrane component of TAM transport system from Variovorax sp. SCN45

 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 113/560 (20%), Positives = 189/560 (33%), Gaps = 90/560 (16%)

Query: 256 ITVNIQEGQKYTVRDVKLS--------GELKVPQDQVQALLLVKKGQVFSRKLMTTTSDL 307
           I + +  G+   V +V++S           +  +D ++    ++ GQ F+++        
Sbjct: 149 IVITVSPGELTKVSNVQISYGGPIADDATAEAQRDSIRTAWALRAGQPFTQQAWDEAKTT 208

Query: 308 ITRRLGNDGYTFANVSGTPQVHEAD-HTVDITFSVEPGKRAYVNRINFRGNTKTDDKVLR 366
             R L    +   N+  +    +AD H   ++ + + G       +  RG  + D    R
Sbjct: 209 ALRSLTAKRFPTGNIEISRAEVDADRHEARLSVTYQSGPAYKFGPLVLRGIQRYDPDGAR 268

Query: 367 REMRQMEGGWASTYLIDQSKVRLERLGYFKEVNVETPAVTGLDDQLDVNYAVQEQASGSI 426
           R  R   G       +  ++ RL   GY+  V +     +G      V   ++E     +
Sbjct: 269 RIARLPSGQDYDQQKLLDAQQRLASSGYYDSVFLTLDTESGNPLAAPVIAQLREAPLQKV 328

Query: 427 TASVGFAQSSGLILGGSITQNNFLGTGNSASLGLTRSSYQSKYNIGFTDPYFTRDGVSLG 486
               GF   +G  L      N     G  A   L+                  RD  SL 
Sbjct: 329 VLGAGFTTDNGPRLSVDHIHNQVPLLGWRAVSRLS----------------VDRDIKSLS 372

Query: 487 YNAFYNKTDYNKYYDDGVSYYAINSYGLGASLGYPINETSRLSFGLTAQHDSIEPGTYSA 546
                  T+ N   DD    +   +       G  + ++ RL  G     D I+   +  
Sbjct: 373 -------TELNAIPDDHGWRWFSGAELKSEQSGSYVVDSGRLRGGRNKSSDHIDRSYFLQ 425

Query: 547 DEIYDFIEREGKQF----TNFKANLGWSESTLNKGVLATRGHAQNLNLTV--TVPGSDLS 600
              YD+ +  G       +   AN GW+    +     +RG    L +    T+ G    
Sbjct: 426 ---YDYAQNRGTNAPPSASAVTANWGWTGRYFDNNSAPSRGFGIALEVAAGYTLTGMQTP 482

Query: 601 FYKIDYTGQTFLPV-------SNNTALRLHTKLGYGNGYGSTDG--LPFYESYTAGGEGT 651
           F +        LP+       +N    RL  +L  G    + D   +P    +  GG+ T
Sbjct: 483 FTRTYARWLGVLPLGSSDDKETNARRSRLQLRLE-GGAVAAKDSAQIPSTLMFLTGGDTT 541

Query: 652 VRGF---ESGTLGPRSTPATGTYASAGQAYYSDRDTEALGGNILITGGAEYLFPVPFIKD 708
           VRG+   + GT+ P  T   G Y                    L     E+  PV +   
Sbjct: 542 VRGYSYKQIGTVRPDGTTVAGRY--------------------LGVASVEWQRPVVYNNK 581

Query: 709 NKSVRTSLFWDVGSVYSDKCYLSTTQGCGGVDLSQMASSVGVGVTWYSPLGPLSVNLAYP 768
                + +F D G+V      L    G            VGVG  W SP+GP+  +LAY 
Sbjct: 582 LTDWESVVFVDAGAVADKPAELKPKVG------------VGVGARWRSPVGPVQADLAYG 629

Query: 769 IRTPENADKQVFQFSMGQTF 788
           +    ++ +    F +G TF
Sbjct: 630 V----DSKRFRLHFRLGFTF 645



 Score = 29.6 bits (65), Expect = 5e-04
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query: 14  LNASLALAQGFKISDIRINGLQRVSAGSVFGALPLNVGDEADDRRLVDSTRALFKTGYFQ 73
           L+ +      +K   + + G+QR           L  G + D ++L+D+ + L  +GY+ 
Sbjct: 239 LSVTYQSGPAYKFGPLVLRGIQRYDPDGARRIARLPSGQDYDQQKLLDAQQRLASSGYYD 298

Query: 74  DIQLS 78
            + L+
Sbjct: 299 SVFLT 303