Pairwise Alignments

Query, 788 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 633 a.a., Outer membrane component of TAM transport system from Sphingobium sp. HT1-2

 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 118/554 (21%), Positives = 197/554 (35%), Gaps = 84/554 (15%)

Query: 256 ITVNIQEGQKYTVRDVKLSG--ELKVPQDQVQALLLVKKGQVFSRKLMTTTSDLITRRLG 313
           +  ++  G  Y +  V+++G  E    ++ ++    +K G   +   +      +   LG
Sbjct: 143 VIFDVTPGPLYVLDTVEIAGLAETGPREETLRGAFTMKSGDPINADRILAGQTALATALG 202

Query: 314 NDGYTFANVSGTPQV---HEADHTVDITFSVEPGKRAYVNRINFRGNTKTDDKVLRREMR 370
            +GY FA V   P+V   HEA +  D+   V PG      +I    +     + L+R  R
Sbjct: 203 ENGYPFARVD-EPEVRIDHEARNG-DLDIIVTPGGYRSFGQILLDNDDVFSARHLQRMAR 260

Query: 371 QMEGGWASTYLIDQSKVRLERLGYFKEVNVETPAVTGLDDQLDVNYAVQEQASGSITASV 430
              G       ++  +  +   G    V + TP   G  + +D++  ++     +I   +
Sbjct: 261 FEPGETYRATDVEDLRRAIVTTGLVSSVTL-TPKDAGDGEHVDLDVDLRPAPMRTIAGEL 319

Query: 431 GFAQSSGLILGGSITQNNFLGTGNSASL----GLTRSSYQSKYNIGFTDPYFTRDGVSLG 486
           G+    G     S    N      S +L    G    + Q+ Y     + +  RD V  G
Sbjct: 320 GYGTGEGYRAEVSWQHRNLFPPEGSLTLRGVLGTQEQTAQATYR---RNNFRERDHVLTG 376

Query: 487 YNAFYNKTDYNKYYDDGVSYYAINSYGLGASLGYPINETSRLSFGLTAQHD--------- 537
                            VSY  I      A        T  LS GL  Q +         
Sbjct: 377 L----------------VSYSNIRRDAYDA-------RTITLSGGLERQTNILFQKHWVW 413

Query: 538 SIEPGTYSADEIYDFIEREGKQFTNFKANLGWSESTLNKGVLATRGH--AQNLNLTVTVP 595
            +     ++DE   F     + F      L  +    +  +  ++G      L+  ++  
Sbjct: 414 RVGAELIASDEADAFSGGSRRTFLIGAVPLSLTYDGSDDLLNPSKGFRLGGRLSPELSFQ 473

Query: 596 GSDLSFYKIDYTGQTFLPVSNNTALRLHTKLGYGNGYGSTDGLPFYESYTAGGEGTVRGF 655
           GS   + K       + P+++   L   T+LG   G  + D +     + AGG  +VRG+
Sbjct: 474 GSTFGYAKAQVDASAYQPINDRVVLAGRTRLGTILG-STVDRIAPSRRFYAGGGASVRGY 532

Query: 656 ESGTLGPRSTPATGTYASAGQAYYSDRDTEALGGNILITGGAEYLFPVPFIKDNKSVRTS 715
               +GPR  P                D + +GG  LI   AE             +R  
Sbjct: 533 GYQAIGPRYGP----------------DDDPVGGKSLIEFSAE-----------ARIR-- 563

Query: 716 LFWDVGSV-YSDKCYLSTTQGCGGVDLSQMASSVGVGVTWYSPLGPLSVNLAYPIRTPEN 774
            F + G V + D   +STT      DL       G+GV +YS  GP+ V++  PI     
Sbjct: 564 -FGNFGVVPFLDAGNISTTFLPRFRDLRV---GTGLGVRYYSSFGPIRVDVGTPINPQPG 619

Query: 775 ADKQVFQFSMGQTF 788
             K     S+GQ F
Sbjct: 620 DAKVAVYVSLGQAF 633



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 305 SDLITRRLGNDGYTFANVSGTPQVHEA-DHTVDITFSVEPGKRAYVNRINFRGNTKT 360
           SDL+ R L  DGY  A V G+     A    + + F V PG    ++ +   G  +T
Sbjct: 110 SDLLDRLLRADGYYAARVRGSVAPPPAGSDKLSVIFDVTPGPLYVLDTVEIAGLAET 166