Pairwise Alignments

Query, 788 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 810 a.a., outer membrane protein assembly factor BamA from Escherichia coli ECRC62

 Score =  565 bits (1456), Expect = e-165
 Identities = 318/815 (39%), Positives = 471/815 (57%), Gaps = 32/815 (3%)

Query: 1   MNFSRLLCSVALLLNASLALAQGFKISDIRINGLQRVSAGSVFGALPLNVGDEADDRRLV 60
           M   +LL +  L  +A++  A+GF + DI   GLQRV+ G+   ++P+  GD  +D  + 
Sbjct: 1   MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS 60

Query: 61  DSTRALFKTGYFQDIQLSREGDVLIINVVERPSVASIEFEGNKAIATDDLMKGMKQSGLS 120
           ++ RALF TG F+D+++ R+GD L++ V ERP++ASI F GNK++  D L + ++ SG+ 
Sbjct: 61  NTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR 120

Query: 121 ESEIFQRATLEGLRNELQRQYVAQGRYSASVDTEVVPQPRNRVGLKIKIDEGEVASIQHI 180
             E   R T+  +   L+  Y + G+YSASV   V P PRNRV LK+   EG  A IQ I
Sbjct: 121 VGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQI 180

Query: 181 NVVGNTVFADAALLDQFTLKTS-NWLSFFRNDDKYAREKLSGDLERLRSFYLDRGYINMD 239
           N+VGN  F    L+  F L+    W +    D KY ++KL+GDLE LRS+YLDRGY   +
Sbjct: 181 NIVGNHAFTTDELISHFQLRDEVPWWNVV-GDRKYQKQKLAGDLETLRSYYLDRGYARFN 239

Query: 240 IASTQVSMTPDKKHVYITVNIQEGQKYTVRDVKLSGELKVPQDQVQALLLVKKGQVFSRK 299
           I STQVS+TPDKK +Y+TVNI EG +Y +  V++SG L     +++ L  ++ G++++  
Sbjct: 240 IDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGT 299

Query: 300 LMTTTSDLITRRLGNDGYTFANVSGTPQVHEADHTVDITFSVEPGKRAYVNRINFRGNTK 359
            +T   D I + LG  GY +  V   P++++AD TV +  +V+ G R YV +I F GN  
Sbjct: 300 KVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDT 359

Query: 360 TDDKVLRREMRQMEGGWASTYLIDQSKVRLERLGYFKEVNVETPAVTGLDDQLDVNYAVQ 419
           + D VLRREMRQMEG W  + L+DQ K RL RLG+F+ V+ +T  V G  DQ+DV Y V+
Sbjct: 360 SKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVK 419

Query: 420 EQASGSITASVGFAQSSGLILGGSITQNNFLGTGNSASLGLTRSSYQSKYNIGFTDPYFT 479
           E+ +GS    +G+   SG+     + Q+N+LGTG +  +  T++ YQ+   +  T+PYFT
Sbjct: 420 ERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFT 479

Query: 480 RDGVSLGYNAFYNKTDYNKYYDDGVSYYAINSYGLGASLGYPINETSRLSFGLTAQHDSI 539
            DGVSLG   FYN    +   D  +S Y   SYG   +LG+PINE + L  GL   H+S+
Sbjct: 480 VDGVSLGGRLFYNDFQAD---DADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSL 536

Query: 540 ---EPGT------YSADEIYDFIEREGKQFT-NFKANLGWSESTLNKGVLATRGHAQNLN 589
              +P        YS  E     +++    T +F  N GW+ + L++G   T G   NL 
Sbjct: 537 SNMQPQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLT 596

Query: 590 LTVTVPGSDLSFYKIDYTGQTFLPVSNN--TALRLHTKLGYGNGYGSTDGLPFYESYTAG 647
             VT+PGSD  +YK+     T++P+ ++    +   T+ GYG+G G  + +PFYE++ AG
Sbjct: 597 GKVTIPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKE-MPFYENFYAG 655

Query: 648 GEGTVRGFESGTLGPRST--PATGT-------YASAGQAYYSD--RDTEALGGNILITGG 696
           G  TVRGF+S T+GP++   P   +       Y  A Q    D  +  +A+GGN +    
Sbjct: 656 GSSTVRGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVAS 715

Query: 697 AEYLFPVPFIKDN--KSVRTSLFWDVGSVYSDKCYLSTTQGCGGV-DLSQMASSVGVGVT 753
            E++ P PFI D    SVRTS FWD+G+V+      S   G     D S +  S G+ + 
Sbjct: 716 LEFITPTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQ 775

Query: 754 WYSPLGPLSVNLAYPIRTPENADKQVFQFSMGQTF 788
           W SPLGPL  + A P +  +    + FQF++G+T+
Sbjct: 776 WMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 810