Pairwise Alignments

Query, 788 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 683 a.a., Outer membrane protein assembly factor BamA from Azospirillum sp. SherDot2

 Score =  103 bits (258), Expect = 2e-26
 Identities = 135/560 (24%), Positives = 219/560 (39%), Gaps = 75/560 (13%)

Query: 254 VYITVNIQEGQKY-----TVRDVKLSGELKVPQDQVQA--LLLVKKGQVFSRKLMTTTSD 306
           V +TV +  G  Y     TVR V  S    +   +V    L LV      ++K++   S+
Sbjct: 174 VKVTVAVTPGPLYHIKTVTVRGVSSSASSSILPKEVATDDLGLVAGAPAIAQKVLDAESE 233

Query: 307 LITRRLGNDGYTFANVSGTPQVHE-ADHTVDITFSVEPGKRAYVNRINFRGNTKTDDKVL 365
           L+ R L   GY FA V G   V + +D T+D+T++V+PG           G  + D+ ++
Sbjct: 234 LVGR-LSKRGYAFAKVPGREVVVDHSDRTMDVTYTVDPGPLTRYGATRIEGLEQVDENLV 292

Query: 366 RREMRQMEGGWASTYLIDQSKVRLERLGYFKEVNVETPAVTGLDDQLDVNYAVQEQASGS 425
           R  +   EG        D+++  +  L  F  V V      G D    V  +V E+    
Sbjct: 293 RGRLAWKEGQVYDPGATDRARQDIAALQVFDTVRVRMADEPGPDGVTPVIVSVGERKRRF 352

Query: 426 ITASVGFAQSSGL----------ILGGSITQNNFLGTGNSA-SLGLTRSSYQSKYNIGFT 474
           I   V ++   G+          + GG+      +  G  A S G T S      ++ F+
Sbjct: 353 IGGGVTYSTQDGVGANAYWGHRNLFGGAEQLRVGVDVGRVAGSSGGTSSKGNDLPDLRFS 412

Query: 475 DPYFTRDGVSLGYNAFYNKTDYNKYYDDGVSYYAINSYGLGASLGYPINETSRLSFGLTA 534
             +   D +++  +   N    N   D   +Y  + S  L   L  P+ +   +S+G+T 
Sbjct: 413 VNFRKPDFLAVKQSLLVNFAVVN---DQPPAYSRVAS-ELTVKLERPLTDQLTVSYGVTG 468

Query: 535 QHDSIEPGTYSADEIYDFIEREGKQFTNFKANLGW--SESTLNKGVLATRGHAQNLNLTV 592
           +   +     + D  Y         F        W  +++ LN     T G   +L +T 
Sbjct: 469 ERGRVR----TEDTTYQ------TSFIGVPLGAAWNGTDNLLN----PTSGQRASLQVTP 514

Query: 593 TVP-GSDLS--FYKIDYTGQTFLPVSNNTALRLHTKLGYGNGYG-STDGLPFYESYTAGG 648
             P G D    F  I   G T+  +  +       ++G G+  G S   +P    + AGG
Sbjct: 515 WFPVGGDTKSPFTSILLNGSTYYDLGKDGRYVAAGRIGLGSILGTSLSDIPPDHRFYAGG 574

Query: 649 EGTVRGFESGTLGPRSTPATGTYASAGQAYYSDRDTEALGGNILITGGAEYLFPVPFIKD 708
            G+VRG+     GPR                 DR  + +GG  L   GAE       IK 
Sbjct: 575 GGSVRGYGFQKAGPR-----------------DRYDDPVGGRSLFEIGAELR-----IKV 612

Query: 709 NKSVRTSLFWDVGSVYSDKCYLSTTQGCGGVDLSQMASSVGVGVTWYSPLGPLSVNLAYP 768
            +S+    F D G+VY DK Y   ++         +    G+G+ +Y+  GPL V++  P
Sbjct: 613 TESIGVVPFVDAGTVY-DKAYPDFSE--------PLRVGAGLGLRYYTDFGPLRVDVGVP 663

Query: 769 IRTPENADKQVFQFSMGQTF 788
           +       +     S+GQ F
Sbjct: 664 LNPASGDSRWQLYLSLGQAF 683



 Score = 26.2 bits (56), Expect = 0.006
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 13/173 (7%)

Query: 134 RNELQRQYVAQGRYSASVDTEV--------VPQPRNRVGLKIKI--DEGEVASIQHINVV 183
           R+ LQ    + G Y A +D  +        +P       +K+ +    G +  I+ + V 
Sbjct: 135 RDRLQTALRSAGYYDAKLDIRIDDPAAAGTLPAGGQAPPVKVTVAVTPGPLYHIKTVTVR 194

Query: 184 GNTVFADAALLDQFTLKTSNWLSFFRNDDKYAREKLSGDLERLRSFYLDRGYINMDIAST 243
           G +  A +++L +     ++ L         A++ L  + E L      RGY    +   
Sbjct: 195 GVSSSASSSILPKEV--ATDDLGLVAGAPAIAQKVLDAESE-LVGRLSKRGYAFAKVPGR 251

Query: 244 QVSMTPDKKHVYITVNIQEGQKYTVRDVKLSGELKVPQDQVQALLLVKKGQVF 296
           +V +    + + +T  +  G        ++ G  +V ++ V+  L  K+GQV+
Sbjct: 252 EVVVDHSDRTMDVTYTVDPGPLTRYGATRIEGLEQVDENLVRGRLAWKEGQVY 304