Pairwise Alignments

Query, 258 a.a., polar amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 256 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  151 bits (382), Expect = 1e-41
 Identities = 91/249 (36%), Positives = 139/249 (55%), Gaps = 20/249 (8%)

Query: 3   FNWDVFWQYLLQPSGVYLTGLWLTCLIAVSAMLLGCVLGLAAALLRLSKNP--------- 53
           F WD+  +Y      ++  G W+T  + V  +LLG   GL  AL RL++           
Sbjct: 11  FRWDILVEY----KDLFWQGAWMTLRMTVVCVLLGSSWGLCLALARLAQPRHAPWTWVAR 66

Query: 54  -LLHLPVRFYVWLMRGTPLLVQIVFLYTALAAGGIFRFEDIDLFGLVVP------GNIQA 106
             L  P   YV   RGTPL VQI+ ++ A+    I     + + G +        G + +
Sbjct: 67  FFLRWPATVYVSFFRGTPLFVQILLIHFAVMPVFIHPTSGLLIDGELARTLKQEHGALIS 126

Query: 107 AIIALGLNEGAYMAEIIRAGIGAVDKGQYEAGRSLGMGFAKLMRRIVLPQAFRVIVPPLG 166
            ++AL LN  AY++E+ RAGI ++ +GQ++AGRSLG   A++MR +VLPQAFR ++PPLG
Sbjct: 127 GVVALTLNSAAYISEVFRAGIQSISRGQFDAGRSLGFSPAQVMRYVVLPQAFRRMLPPLG 186

Query: 167 NEFNVMLKNTTLVSVIGVQELLLSTQMVTSATFRVFELYLVVAIYFLMLTTLWGFFQRWL 226
           N    +LK+T+LVS IG+ EL  + + V  A  R +E YL +++ + ++T +     R L
Sbjct: 187 NNAIALLKDTSLVSAIGLAELAYAARTVAGAYARYWEPYLAISVIYWVMTLVLTTLLRRL 246

Query: 227 EARFGQSDR 235
           E R  +SDR
Sbjct: 247 EIRLARSDR 255