Pairwise Alignments

Query, 258 a.a., polar amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 265 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  154 bits (388), Expect = 2e-42
 Identities = 93/222 (41%), Positives = 134/222 (60%), Gaps = 20/222 (9%)

Query: 3   FNWD--VFWQYLLQPSGVYLTGLWLTCLIAVSAMLLGCVLGLAAALLRLSKNPLLHLPVR 60
           ++WD  V W Y      + L GL  T +  V  ++LG  +GL   L RLS+NP +  P+R
Sbjct: 45  YDWDFGVLWSY----RRLLLIGLAYTLVFTVVCVVLGLAIGLITGLGRLSRNPWISAPIR 100

Query: 61  FYVWLMRGTPLLVQIVFLYTALAAGGIFRFEDIDLFGLVVPGNIQAAIIALGLNEGAYMA 120
            Y+ + R TP+LVQ+V+ Y AL            L GL +   + AA + L L  GA+ +
Sbjct: 101 AYIEVFRCTPVLVQLVWFYYALPV----------LTGLEISA-VAAATLCLSLYGGAFYS 149

Query: 121 EIIRAGIGAVDKGQYEAGRSLGMGFAKLMRRIVLPQAFRVIVPPLGNEFNVMLKNTTLVS 180
           EI+R GI ++D GQ EA R+LGM   +LMRRIVLPQAF+ +VPPL ++  + LKNT+L+S
Sbjct: 150 EIVRGGIISIDNGQVEAARALGMTRMQLMRRIVLPQAFKRMVPPLMSQSIMQLKNTSLLS 209

Query: 181 VIGVQELLLSTQMVTSATFRVFELYLVVAI-YFLML--TTLW 219
           V+ V +LL   Q++   T+R  ELY  +A+ YF +L   T+W
Sbjct: 210 VLAVPDLLYQGQVIAHETYRPLELYTFIAVAYFAVLLPVTIW 251