Pairwise Alignments

Query, 703 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 714 a.a., type II secretion system secretin GspD from Dickeya dianthicola ME23

 Score =  166 bits (421), Expect = 3e-45
 Identities = 162/635 (25%), Positives = 286/635 (45%), Gaps = 43/635 (6%)

Query: 92  NFADQPIEAVINSVMGDLLHENYSIAQGVKGNVSFSTSKPVDKQQALSILETLLSWTDNA 151
           +F    I+  IN+V  +L ++   I   V+G +S  +   +++ Q      ++L     +
Sbjct: 33  SFKGTDIQEFINTVSKNL-NKTVIIDPTVRGTISVRSYDMMNEGQYYQFFLSVLDVYGFS 91

Query: 152 MIKQGDRYVILPANQAVAGKLVPQMNVAQPSSG--LSARLFALRYISATEMQKLLKPF-- 207
           ++   +  + +  ++      +P  N  QP  G  L  R+  L  ++A ++  LL+    
Sbjct: 92  VVPMDNGVLKVIRSKDAKSSSIPLANNEQPGVGDELVTRVVPLNNVAARDLAPLLRQLND 151

Query: 208 -ARENAFLLVDPARNVLSLAGTPDELANYQDTIDTFDVDWLKGM-SVGVFGLQRASVAEL 265
            A     +  +P+ NVL + G    +    D ++T D    + M +V +       VA+L
Sbjct: 152 NAGAGTVVHYEPS-NVLLMTGRAAVIKRLVDIVNTVDKTGDREMITVPLTYASAEDVAKL 210

Query: 266 MPQLQSMFGPDSGMPLAGMLRFLPIERTNSVVAISSQPQYLSEVGDWIRTIDEGGGNEPQ 325
           +  L       + +P   +   +  ERTNSVV +S +        + IR +D     +  
Sbjct: 211 VNDLNKT-DEKNALPSTMLANVVADERTNSVV-VSGEENGRQRAIEMIRQLDRKQVAQGG 268

Query: 326 MYVYDVRNMKAADLAKYL--------RQIYGTGAIKDDTPAKVAPGLRTTTLSS--LNSG 375
             V  ++  KA DL + L        R    + A +  +      GL +   SS   NS 
Sbjct: 269 TKVIYLKYAKALDLIEVLAGNGTSGNRNSSSSNASRSSSSRTSNSGLNSNNNSSGSTNSS 328

Query: 376 GLQNNPPAAEESEPQEKEVAPTSALEAGT--------RITAQKSSNQLLVRTRPAQWKEI 427
           G  ++  ++  S         TS+    T         + A   +N L++   P   +++
Sbjct: 329 GSSSSSSSSSSSMGFGSTFGSTSSSGGRTIVIQGKEVTVRAHDQTNSLIITAPPDIMRDL 388

Query: 428 EAAIKRLDNPPLQVQIETRILEVKLTGELDLGVQWYLGRLA-------GNSSSTTVANAS 480
           E  I +LD    QV +E  I E++    L+LG+QW   R         G   ST V    
Sbjct: 389 EQVINQLDIRRPQVLVEAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAVIGTD 448

Query: 481 G--SQGALGGGGAG-LGATDSLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPA 537
              S G L    A  LG+ + +   F   N  + L AL  + +  VL+ PS+V ++N  A
Sbjct: 449 QFRSDGTLTTAYASALGSFNGITAGFYRGNWSMLLTALSRDSKNDVLATPSIVTLDNMEA 508

Query: 538 QIQVGDNIPI---NQTTVNTGDADTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVS 594
              VG  +P+   +QTTV +G+     ++VE    G+ L V P+IN G  V + I+Q+VS
Sbjct: 509 TFNVGQEVPVLTGSQTTVGSGN--NIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVS 566

Query: 595 DAENQSTNSDTPVNPRISTRSVSTQVAVQSGQTVLLGGLIKQDNQESVSAVPYLGKIPGL 654
              + ++++++ +    +TR+V+  V V +G+TV++GGL+ +   ES   VP LG IP L
Sbjct: 567 SVADSNSSTNSSLGATFNTRTVNNAVMVTNGETVVVGGLLDKTTIESNDKVPLLGDIPWL 626

Query: 655 RWLFGSTSKSKDRTELIVLITPKVITSSGQARQVT 689
             LF S S+S ++  L++ + P +I   GQ ++ +
Sbjct: 627 GSLFRSKSQSVNKRNLMLFLRPTIIRDPGQFQEAS 661