Pairwise Alignments

Query, 502 a.a., ribonucleotide-diphosphate reductase subunit alpha from Pseudomonas simiae WCS417

Subject, 500 a.a., predicted sugar transporter subunit: ATP-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  353 bits (907), Expect = e-102
 Identities = 201/473 (42%), Positives = 294/473 (62%), Gaps = 14/473 (2%)

Query: 4   LLKLENICKRYPGVQALKSINLQVERGEIHALLGENGAGKSTLMKILGGVEHQDEGQILI 63
           +L+ E + K +PGV+AL +++  + RGEI ALLGENGAGKSTL+K L GV H D G I +
Sbjct: 9   ILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWL 68

Query: 64  DGQAQQFATYRDAIAAGIGIVFQEFSLIPYLTAVENIFLGHELSNRFGLLRKREMVEASE 123
           +GQA        A   GIG V+QE +L+P ++  +N+F+G E   RFGLLR++EM + + 
Sbjct: 69  EGQAISPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGRE-PKRFGLLRRKEMEKRAT 127

Query: 124 ALFKRLGVTIDLQCAVKHLSVAEQQFVEIAKALALDARLLVLDEPTATLTPSEAELLFEI 183
            L    G ++D++  +   SVA QQ V I +A+ L A++L+LDEPTA+L   E ELLF++
Sbjct: 128 ELMASYGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQEVELLFDL 187

Query: 184 MRELKRQGVAVIFISHHLEEIFQVCDRISVLRDGGNVGVTDVADSDIDHLVEMMVGRRLA 243
           MR+L+ +GV++IF++H L++++QV DRI+VLR+G  VG  +  +     LV+MM+GR L 
Sbjct: 188 MRQLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKMMLGREL- 246

Query: 244 CSFPPKPTRERGPLLLEVKDIQLVRN-------GPHNRFQLHKGEILGFAGLVGSGRTEL 296
                   +  G  LL  K +   +N        P +  ++  GEI+G AGL+GSGRTE 
Sbjct: 247 ---DTHALQRAGRTLLSDKPVAAFKNYGKKGTIAPFD-LEVRPGEIVGLAGLLGSGRTET 302

Query: 297 ALGMMGALPSVSKDVWLRGEKITLDDPAQALAHGIGLLPESRKSEGLITDFSIRENISLN 356
           A  + G  P+ S    ++G+   L  P QA   GIG  PE RK++G+I   S+RENI L 
Sbjct: 303 AEVIFGIKPADSGTALIKGKPQNLRSPHQASVLGIGFCPEDRKTDGIIAAASVRENIIL- 361

Query: 357 NLPKYQNASGLIDKNRECASVEGLMKQLSIKAPSSESRVFNLSGGNQQKVVIARWINHHC 416
            L   +     I +  +    E  ++QL I+ PS+E  +  LSGGNQQKV+++RW+    
Sbjct: 362 ALQAQRGWLRPISRKEQQEIAERFIRQLGIRTPSTEQPIEFLSGGNQQKVLLSRWLLTRP 421

Query: 417 DVLVFDEPTRGIDVGAKAQIYALMRSLTEQGYAIIMISSELPEIIGMCDRVAV 469
             L+ DEPTRGIDVGA A+I  L+ +L   G A+++ISSEL E++G  DRV +
Sbjct: 422 QFLILDEPTRGIDVGAHAEIIRLIETLCADGLALLVISSELEELVGYADRVII 474



 Score = 84.7 bits (208), Expect = 7e-21
 Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 9/226 (3%)

Query: 12  KRYPGVQALKSINLQVERGEIHALLGENGAGKSTLMKILGGVEHQDEGQILIDGQAQQFA 71
           K Y     +   +L+V  GEI  L G  G+G++   +++ G++  D G  LI G+ Q   
Sbjct: 268 KNYGKKGTIAPFDLEVRPGEIVGLAGLLGSGRTETAEVIFGIKPADSGTALIKGKPQNLR 327

Query: 72  TYRDAIAAGIGIVFQEFS---LIPYLTAVENIFLGHELSNRFGLLR---KREMVEASEAL 125
           +   A   GIG   ++     +I   +  ENI L   L  + G LR   ++E  E +E  
Sbjct: 328 SPHQASVLGIGFCPEDRKTDGIIAAASVRENIILA--LQAQRGWLRPISRKEQQEIAERF 385

Query: 126 FKRLGV-TIDLQCAVKHLSVAEQQFVEIAKALALDARLLVLDEPTATLTPSEAELLFEIM 184
            ++LG+ T   +  ++ LS   QQ V +++ L    + L+LDEPT  +       +  ++
Sbjct: 386 IRQLGIRTPSTEQPIEFLSGGNQQKVLLSRWLLTRPQFLILDEPTRGIDVGAHAEIIRLI 445

Query: 185 RELKRQGVAVIFISHHLEEIFQVCDRISVLRDGGNVGVTDVADSDI 230
             L   G+A++ IS  LEE+    DR+ ++RD   V    +A+  +
Sbjct: 446 ETLCADGLALLVISSELEELVGYADRVIIMRDRKQVAEIPLAELSV 491



 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 275 FQLHKGEILGFAGLVGSGRTELALGMMGALPSVSKDVWLRGEKITLDDPAQALAHGIGLL 334
           F L +GEI+   G  G+G++ L   + G   +    +WL G+ I+  + A A   GIG +
Sbjct: 30  FSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWLEGQAISPKNTAHAQQLGIGTV 89

Query: 335 PESRKSEGLITDFSIRENISLNNLPKYQNASGLIDKNRECASVEGLMKQLSIKAPSSESR 394
            +      L+ + S+ +N+ +   PK     GL+ +         LM          E  
Sbjct: 90  YQE---VNLLPNMSVADNLFIGREPK---RFGLLRRKEMEKRATELMASYGFSLDVREP- 142

Query: 395 VFNLSGGNQQKVVIARWINHHCDVLVFDEPTRGIDVGAKAQIYALMRSLTEQGYAIIMIS 454
           +   S   QQ V I R I+    VL+ DEPT  +D      ++ LMR L ++G ++I ++
Sbjct: 143 LNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQEVELLFDLMRQLRDRGVSLIFVT 202

Query: 455 SELPEIIGMCDRVAVFHKGAIVKLLEASAVNPQEVMRHATG 495
             L ++  + DR+ V   G+ V   E   +   E+++   G
Sbjct: 203 HFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKMMLG 243