Pairwise Alignments

Query, 502 a.a., ribonucleotide-diphosphate reductase subunit alpha from Pseudomonas simiae WCS417

Subject, 499 a.a., hypothetical protein from Escherichia coli BL21

 Score =  418 bits (1075), Expect = e-121
 Identities = 229/496 (46%), Positives = 315/496 (63%), Gaps = 7/496 (1%)

Query: 3   SLLKLENICKRYPGVQALKSINLQVERGEIHALLGENGAGKSTLMKILGGVEHQDEGQIL 62
           + L++++I KR+PGV AL  +   + RGE+HALLGENGAGKSTLMKIL GV   DEG+I+
Sbjct: 4   TFLQMKHITKRFPGVLALNDVQFSLRRGEVHALLGENGAGKSTLMKILSGVYQPDEGEII 63

Query: 63  IDGQAQQFATYRDAIAAGIGIVFQEFSLIPYLTAVENIFLGHEL--SNRFGLLRKREMVE 120
            + +   F+    A   GI I+ QEF+L P LT  ENIF+G E    NR+ L  K++  +
Sbjct: 64  FEDKPVSFSDPLSAQNVGITIIHQEFNLFPELTVEENIFIGREFCKKNRWRLDEKQQR-Q 122

Query: 121 ASEALFKRLGVTIDLQCAVKHLSVAEQQFVEIAKALALDARLLVLDEPTATLTPSEAELL 180
           A+  + ++L + I     V  L+VA+QQ VEIAKA++++AR+L++DEPTA LT +E E L
Sbjct: 123 ATIEILQKLNLAIKPDTLVADLTVAQQQMVEIAKAISVNARILIMDEPTAALTETEIESL 182

Query: 181 FEIMRELKRQGVAVIFISHHLEEIFQVCDRISVLRDGGNVGVTDVADSDIDHLVEMMVGR 240
           F + R LK QG  +++ISH LEE+  + DR +V+RDG  +   D     I  L+ MMVGR
Sbjct: 183 FRVTRLLKEQGTGIVYISHRLEELALIADRATVMRDGQYISTVDYECVKISDLIAMMVGR 242

Query: 241 RLACSFPPKPTRERGPLLLEVKDIQLVRNGPHN--RFQLHKGEILGFAGLVGSGRTELAL 298
            L   +P +   ++   +LEV    L R G  N   F L++GEILGFAGL+G+GRTELA 
Sbjct: 243 DLGNIYPRREALQQRIPVLEVNG--LTRKGVLNDINFTLYRGEILGFAGLMGAGRTELAR 300

Query: 299 GMMGALPSVSKDVWLRGEKITLDDPAQALAHGIGLLPESRKSEGLITDFSIRENISLNNL 358
            + GA    S  + L G++  + D + A+  GI  L E RK EGL  + S+  NI L N 
Sbjct: 301 AIFGADSIDSGTLKLNGKETVIKDISDAIQQGISYLTEDRKKEGLALNLSVERNIMLGNY 360

Query: 359 PKYQNASGLIDKNRECASVEGLMKQLSIKAPSSESRVFNLSGGNQQKVVIARWINHHCDV 418
           P+Y +  G +D  R   + E  +K L IK P+ E    NLSGGNQQK++IARW+    D+
Sbjct: 361 PEYSDRFGNVDSRRCQQTSEEQVKALRIKTPNLEQAALNLSGGNQQKIIIARWVCKDTDI 420

Query: 419 LVFDEPTRGIDVGAKAQIYALMRSLTEQGYAIIMISSELPEIIGMCDRVAVFHKGAIVKL 478
           L+FDEPTRGIDVGAK +IY LM  L  +G +IIMISSELPE++GMCDR+ V   G I   
Sbjct: 421 LIFDEPTRGIDVGAKLEIYELMNRLVAKGKSIIMISSELPEVLGMCDRILVMRSGRITGE 480

Query: 479 LEASAVNPQEVMRHAT 494
           L A     +++M++AT
Sbjct: 481 LSAKEATQEKIMQYAT 496



 Score = 79.0 bits (193), Expect = 4e-19
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 16/248 (6%)

Query: 249 KPTRERGPLLLEVKDIQLVRNGPHNRFQLHKGEILGFAGLVGSGRTELALGMMGALPSVS 308
           K   +R P +L + D+Q         F L +GE+    G  G+G++ L   + G      
Sbjct: 9   KHITKRFPGVLALNDVQ---------FSLRRGEVHALLGENGAGKSTLMKILSGVYQPDE 59

Query: 309 KDVWLRGEKITLDDPAQALAHGIGLLPESRKSEGLITDFSIRENISLNNLPKYQNASGLI 368
            ++    + ++  DP  A   GI ++    +   L  + ++ ENI +      +N   L 
Sbjct: 60  GEIIFEDKPVSFSDPLSAQNVGITII---HQEFNLFPELTVEENIFIGREFCKKNRWRLD 116

Query: 369 DKNRECASVEGLMK-QLSIKAPSSESRVFNLSGGNQQKVVIARWINHHCDVLVFDEPTRG 427
           +K +  A++E L K  L+IK    ++ V +L+   QQ V IA+ I+ +  +L+ DEPT  
Sbjct: 117 EKQQRQATIEILQKLNLAIKP---DTLVADLTVAQQQMVEIAKAISVNARILIMDEPTAA 173

Query: 428 IDVGAKAQIYALMRSLTEQGYAIIMISSELPEIIGMCDRVAVFHKGAIVKLLEASAVNPQ 487
           +       ++ + R L EQG  I+ IS  L E+  + DR  V   G  +  ++   V   
Sbjct: 174 LTETEIESLFRVTRLLKEQGTGIVYISHRLEELALIADRATVMRDGQYISTVDYECVKIS 233

Query: 488 EVMRHATG 495
           +++    G
Sbjct: 234 DLIAMMVG 241