Pairwise Alignments

Query, 334 a.a., LacI family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  122 bits (305), Expect = 2e-32
 Identities = 88/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)

Query: 8   TISDIAKRVGMTTITVSRALSKPDLVKPATLARILEVAREMDYVPNAFARGLKRSESLII 67
           TI D+A   G++  TVS  L+K   V      ++     E+DYVP+A AR LK   +  I
Sbjct: 3   TIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTATI 62

Query: 68  GVITASVDNPFYSEMIKAISREAKQHGYTIMLVDTDELEELESKAVDTLLGYRVAGIILS 127
           G++  +  NP+++E+ + I    +++GY ++L ++D+  + +   +  LL  R+ G++++
Sbjct: 63  GLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLVVA 122

Query: 128 PVSDEPSYQPDYLERLANGKTPVVLLDRTIHDSPFSRVVLDNYHSGIQAAHYLLRQTPNL 187
            V  +     D L+ LA+ +TP+V++DR +       V +D+      A  +LL      
Sbjct: 123 SVGQD----DDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLEL--GH 176

Query: 188 KRLLVLTGPEHSRITVERLKGLREVLAE--HPQVEVAVQAGDYTLMPSYLHTLDYLAEHS 245
           + +  + GP  + +T  RL G R  +AE   P     V   D+T    +      L E  
Sbjct: 177 RDVAYIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVL-EGK 235

Query: 246 APDAIMGFNQLITLGALRALRMHNIA-HDSLTICGIDRLPFADIFGVPIACVAHDASLAG 304
            P AI   N +I  G LRA    NI+    L++ G D +  +      +  V       G
Sbjct: 236 RPSAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELG 295

Query: 305 SSAVRLLLDRLEDP 318
            SA  LLL R+  P
Sbjct: 296 ESAASLLLTRIATP 309