Pairwise Alignments

Query, 336 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 355 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  155 bits (392), Expect = 1e-42
 Identities = 112/343 (32%), Positives = 181/343 (52%), Gaps = 35/343 (10%)

Query: 5   NPLPFAKTQSKAMLLWVLAVLIGL-PLILPSA---TLATEILIFAMAALACNLLLGYTGL 60
           N +P  +++  A+LL VL + +   P I P     ++A +IL+F +   + +LLLGYTG+
Sbjct: 9   NDMP--RSRLLALLLVVLFLALAFAPFIFPGVKALSVAAKILVFVVLVASFDLLLGYTGI 66

Query: 61  LSFGQGIFFGAGAYCAALLMIHL--QLGLFTALLGAAIAGGF-LALLVGALAIRRTGIYF 117
           +SF   +FFG GAY  A+    L    G     LGA++A    L+  +G  ++R   I+F
Sbjct: 67  VSFAHTMFFGIGAYGIAISASRLGPNWGAVLVGLGASLAISLVLSFAIGLFSLRVRAIFF 126

Query: 118 VMLTLAFSQMAYFVAYTLSDWTGGDNGL-LSVPR---PEIRLGETVLLSLA-DARAF-YA 171
            M+TLA +     +A  LSD+TGG++GL   +P    P     E   L ++ D R   Y 
Sbjct: 127 AMITLAVASAFQTLASQLSDFTGGEDGLTFKLPELISPSFEFSEEPFLGVSLDGRLLCYY 186

Query: 172 FVAVLFLLIFIGARRVIASPFGSTLMAIRENETRASAIGYDTRHFKILVFVLSGAVTGIA 231
            + V  +++ +   R++ SPFG  L AIRENE RA AIGY    ++    VLS     +A
Sbjct: 187 LLFVAAVVLVLALLRIVNSPFGRVLQAIRENEFRAEAIGYRVVVYRTTAAVLSALFATLA 246

Query: 232 GALYAMLLHF-VPLSNIDLMMSENILIMTIVGGTGSLFGSLLGAGSIVLLGDFLSDL--- 287
           GA+ A+ L +  P +++   +  ++L++ ++GG G+++G+ +GA   V+   +L DL   
Sbjct: 247 GAMLAIWLRYNGPDTSLSFEIMIDVLLIVVIGGMGTIYGAAIGAVLFVIAQSYLQDLLRI 306

Query: 288 ---------W-------PRWLMLLGVILILVVIFMRGGLWGGL 314
                    W        RWL+ LGV+ +L V +   G+ G L
Sbjct: 307 GNEAASGLPWLAALLSPDRWLLWLGVLFVLSVYYFPTGIVGKL 349