Pairwise Alignments

Query, 336 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 332 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  154 bits (389), Expect = 3e-42
 Identities = 105/293 (35%), Positives = 157/293 (53%), Gaps = 7/293 (2%)

Query: 21  VLAVLIGLPLILPS-ATLATEILIFAMAALACNLLLGYTGLLSFGQGIFFGAGAYCAALL 79
           V A    LPL++PS + L  EI I A+ A++ +L+LGYTG++S G   FFG GAY AAL 
Sbjct: 27  VWAAAFALPLVMPSHSLLVNEIAIVALFAMSLDLILGYTGIVSLGHAAFFGFGAYAAALF 86

Query: 80  MIHLQLGLFTALLGAAIAGGFLALLVGALAIRRTGIYFVMLTLAFSQMAYFVAYTLSDWT 139
              +       L  A +    L L+     +R + +  +M+TL  + +   +A  L   T
Sbjct: 87  AKLVMPDPTVGLAVAVVLSALLGLVASVTILRGSDLTRLMVTLGTALLLLELANKLDWLT 146

Query: 140 GGDNGLLSVPR-PEIRLGETVLLSLADARAFYAFVAVLFLLIFIGARRVIASPFGSTLMA 198
           GG +GL  V   P + + +  L     A    A + VLFLL+    RR++ SPFG+TL A
Sbjct: 147 GGADGLQGVVMGPVLGMFDFDLYGRTAAWYSLAVMLVLFLLM----RRLVHSPFGATLKA 202

Query: 199 IRENETRASAIGYDTRHFKILVFVLSGAVTGIAGALYAMLLHFVPLSNIDLMMSENILIM 258
           IR+N  RA AIG       + V+ ++  V G AGAL A    F  L  +    S ++L+M
Sbjct: 203 IRDNRLRAMAIGIPVVPRLVTVYTIAAGVAGAAGALLAQTTGFASLDVLAFDRSADVLLM 262

Query: 259 TIVGGTGSLFGSLLGAGSIVLLGDFLSDLWPR-WLMLLGVILILVVIFMRGGL 310
            ++GG G L+G + GA    LL  +LS + P+ W+  +G+IL+L+V+  R  L
Sbjct: 263 LVIGGVGWLYGGVAGAIVFKLLQTWLSAVTPQYWMFWIGLILVLLVLVGRDRL 315