Pairwise Alignments

Query, 400 a.a., branched-chain amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 411 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  105 bits (261), Expect = 3e-27
 Identities = 103/411 (25%), Positives = 179/411 (43%), Gaps = 22/411 (5%)

Query: 3   RRTLLKASLTAAAALSLPLSIRSAFA----AEPFTFYGLKSMSGAFASY-GKFADMGSRL 57
           R   L+++LT+ A  +L   + +AFA    AE      L   +G  A + G  + + +++
Sbjct: 7   RSGTLRSALTSPALAAL---VCAAFAGGASAESVKVGVLNDQAGVQADFAGAGSVVAAKM 63

Query: 58  AVQQHP-QVLGRALNYKVIDTEGNAGKAVRKVQEAIQQDGARFFQGCTLSSSALAV---A 113
           A+     +V G  +     D +  A   V   ++    DG         S+ AL V   A
Sbjct: 64  AIADFGGKVAGMPIELVAADHQNKADIGVNVTRQWFDTDGVDAVLDVPNSAVALGVSGIA 123

Query: 114 KEVDKVGGVFMTPVGADEVTGKDCNLATFRWSVPTYGAIRETMVPLIKLLPDAKRWYTIT 173
           ++ +KV    ++  G  ++TGKDC+  T  W+  T+         + K       WY I+
Sbjct: 124 RQKNKVA--IISGGGTSDLTGKDCSPNTVHWTYDTWAQANTVGTAVTKA--GGNTWYFIS 179

Query: 174 PQYVFGEALLEGAKNVLKENGLEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQ 233
             Y FG AL   A   +K  G + +G   H L   + S +L    A+   V+ L + G+ 
Sbjct: 180 VDYAFGHALERDAGEAIKAAGGKILGTVRHPLGTSDLSSFLLQGQASGAKVIGLGSAGAD 239

Query: 234 SSNTLRQAVNFGIKERMKVLLVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNRELV 293
           + N ++QA  FGI +  + L+     L+    LG +  +G++L   ++  ++        
Sbjct: 240 TINAVKQASEFGIVKAGQKLVAMLMVLNDISALGLETAQGLFLSEAFYWDLNDQTRSFAK 299

Query: 294 KLTQAQYGINPTYPLAADYISTKIMLDTIIATGSF-DGPTVAKAMQGLSYEGPT-GKESI 351
           +  +A  G  P    A  Y      L  +   GS  DG  V +AM+ +  + P  GK ++
Sbjct: 300 RFAEANGGRYPNMVHAGVYAGLLHYLKAVEKVGSAKDGAKVVEAMKAIPTDDPLFGKGAV 359

Query: 352 RAGDHQVIKDYYLLIGKATADMADKDDLAKVLS---AGQSFPPVEATGCTL 399
           R  D + I D +L   K+ A+     D  K+++   A ++F P+ A  C L
Sbjct: 360 RP-DGRAIHDMHLFEVKSPAESKGPYDFYKLIATVPADKAFRPLAAGNCPL 409