Pairwise Alignments

Query, 467 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

 Score =  192 bits (488), Expect = 2e-53
 Identities = 148/468 (31%), Positives = 233/468 (49%), Gaps = 19/468 (4%)

Query: 11  LCV-LLSACTGNP----PAVDSGIAP---PAAWQFAERDAAQATNQQWWTQFGSPQLNRL 62
           LCV LLSACT +P    P ++S  A       W  A    A A    WW  +G   LN L
Sbjct: 28  LCVALLSACTLSPDYHRPELNSTAAQFKHAEGWTQASPSDAIARGA-WWEIYGDAGLNAL 86

Query: 63  IDQARRDSFDVAAATARVHQAQASAVIAGAPLLPEVKLNLTTSRQKLLRGPGGPDLDASQ 122
           +++  R +  VA + A+  QAQA    + A L P   L+L+TS+ +  +G G      S 
Sbjct: 87  VEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPS--LDLSTSKNRSAQGTGSSSSSLSN 144

Query: 123 SDDTVDN-FGANLTASYEVDFWGGRAAARDSALHNVRASEFDQATVELTLLSSVADRYAQ 181
           +   + N + A L  S+E+D WG      ++   +  AS  D A++ L+  S +   Y Q
Sbjct: 145 NSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFADLASIRLSQQSELVQNYLQ 204

Query: 182 TLAAQQRQQIAELNLANARNVLDLVQTRYDAGSATALELAQQKSLVASQQRQL-PLIQQL 240
                +++++ E  +A     L + + +Y AG A    +AQ ++ + S Q  L  LI Q 
Sbjct: 205 LRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKSTQADLIDLIWQR 264

Query: 241 AEESRITLAALLGQ-PVQALNLGTEPFQALTWPAIGAGLPSQLLSRRPDIAKAEAQLAAA 299
           A+     +A LLG+ P       ++   AL  P I   LPSQLL RRPDIA AE  + AA
Sbjct: 265 AQFEN-AIAVLLGKAPADFALADSKAIPAL--PQIPVSLPSQLLERRPDIAAAERNVMAA 321

Query: 300 QADVTVARAAMLPAITLGATLG--SDAYKAVDVLRSPYYTLTAGLVAPIFNNGRLSAERD 357
            A++ V+RAA  P ++L  + G  S ++     L + Y+++   L   +F+ G+ SAE D
Sbjct: 322 NANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAGKRSAEVD 381

Query: 358 KARARQDELLQTYRGAIINGFADVEKSLSSITRLDQQREWQSEELQQAQTAFQIAESRYQ 417
           +  A  D+ +  YR  +++GF +VE  L  +     +   + E L  A+ + ++ E++Y+
Sbjct: 382 RTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEALDAARESLRLTENQYR 441

Query: 418 AGAEDLLTVLETQRTLYTAQDQNVQLRLSRLQASIALYKALGGGWQTQ 465
           AG    L V+  Q T  + +   + L   RL AS+ L  ALGGGW  +
Sbjct: 442 AGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGWDAE 489