Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 94.0 bits (232), Expect = 2e-24
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%)

Query: 3   ENYYRELVCFLNAKLGNRQVAEDVVHDAYVRVLERSSDT-PIEQPRAFLYRTALNLVIDG 61
           + +Y +L+ FL  ++ +RQ A DV  + Y++++       P+   R+F++R A NL ID 
Sbjct: 14  QEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAIDA 73

Query: 62  HRRNALRQVEPLDVLDA-EERFASSSPHTHHDHGQRLELLERALAELPPACRDSFLLRKL 120
            RR         D   A E    + +P       +RL++L++AL +LP   R + LL ++
Sbjct: 74  LRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQALLLNRV 133

Query: 121 EGLTHLQIAERLSISRAMVEKHIVNAMKHCRVRMRE 156
           EGLT  Q+A+RL +S +MV K+I  A++HCR R+++
Sbjct: 134 EGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQ 169