Pairwise Alignments

Query, 469 a.a., proline-specific permease from Pseudomonas simiae WCS417

Subject, 472 a.a., L-alanine and D-alanine permease (from data) from Pseudomonas simiae WCS417

 Score =  515 bits (1326), Expect = e-150
 Identities = 245/442 (55%), Positives = 327/442 (73%), Gaps = 2/442 (0%)

Query: 8   LKRGLSARHIRFMALGSAIGTGLFYGSASAIQMAGPAVLLAYLIGGAAVFMVMRALGEMA 67
           LKR L  RHIR MALG+ IG GLF GSA AI+MAGPA++L+Y+IGG A+ ++MRALGEMA
Sbjct: 18  LKRELGERHIRLMALGACIGVGLFLGSAKAIEMAGPAIMLSYIIGGLAILVIMRALGEMA 77

Query: 68  VHNPVAGSFGQYASTYLGPMAGFILGWTYAFEMIIVCLADVTAFGIYMGFWFPDVARWVW 127
           VHNPVAGSF +YA  YLGP+AGF+ GW Y F  ++ C+A++TA  +YMG WFPD  RW+W
Sbjct: 78  VHNPVAGSFSRYAQDYLGPLAGFLTGWNYWFLWLVTCVAEITAVAVYMGVWFPDTPRWIW 137

Query: 128 VLGIVLLIGGLNLCNVKVFGEMEFWLSLLKVGAIVAMILGGFGIMLFGIHSAGETQASGL 187
            L  ++ +G +NL  VK FGE EFW +L+K+  I+AM++GG GI+ FG  + G   A G+
Sbjct: 138 ALAALISMGSINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGV--ALGI 195

Query: 188 SNLWAHGGFMPNGIGGLIASFAVVMFAFGGIEIIGITAGEAKDPQRVIPKAINAVPLRIL 247
           SNLWAHGGFMPNG+ G++ S  +VMFA+ G+E+IG+TAGEAK+PQ+ IP AI +V  RIL
Sbjct: 196 SNLWAHGGFMPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPSAIGSVFWRIL 255

Query: 248 LFYVLTLFVLMAIYPWPQIGSQGSPFVQIFSNLGIGSAATILNIVVISAAVSAINSDIFG 307
           LFYV  LFV+++IYPW +IG+QGSPFV  F  LGI +AA I+N VVI+AA+S+ N  IF 
Sbjct: 256 LFYVGALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFVVITAALSSCNGGIFS 315

Query: 308 AGRMMYGLAQQGQAPKGFAQLSKQGVPWMTVVVMGAALLGGVVLNYLIPENVFLVIASIA 367
            GRM+Y LAQ GQAP  FA+ S  GVP   +++   ALL GV+LNYL+PE VF+ + SIA
Sbjct: 316 TGRMLYSLAQNGQAPATFAKTSSNGVPRKALLLSIFALLLGVLLNYLVPEKVFVWVTSIA 375

Query: 368 TFATVWVWLMILFTQVAMRRSMTKEQVAELKFPVPFWPYAPAAAIVFMLFVFGVLGYFPD 427
           TF  +W WLMIL  Q+  R+S++  + A LK+ +  +P +   A+ F+L V G++ YFPD
Sbjct: 376 TFGAIWTWLMILLAQLKFRKSLSPAEQAGLKYRMWLYPVSSYLALAFLLLVVGLMAYFPD 435

Query: 428 TQAALLVGAVWIVLLVVAYLLW 449
           T+ AL VG V++VLL V + ++
Sbjct: 436 TRIALYVGPVFLVLLTVLFYVF 457