Pairwise Alignments

Query, 321 a.a., histidine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 348 a.a., putative glycine betaine/L-proline ABC transporter, periplasmic component from Pseudomonas putida KT2440

 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 63/319 (19%)

Query: 40  NWESGMLLTDILQTVLEKGYDCKTDSLPGNSITMENALSSND--IQVFAEEWV-GRSEVW 96
           NW   + +  IL  ++    D +   L G+   +  A +  D  + V  + W+  +S  +
Sbjct: 36  NWTGAIAIQYILGDIISNRLDGEVSYLAGDLPILFAAAAKGDGSVDVLTDIWLPNQSAAF 95

Query: 97  NKAEKAG--KVVGVGAPVVGAIEGWYVPRYVIEG-DAKRKLEAKAPDLKNIADLAKYASV 153
            K    G   ++    P VG ++G+Y+P Y+ +  + K   + K P++  +     +A +
Sbjct: 96  AKYVTGGTHSLIPNKQPYVG-VQGFYIPGYIQDKYNVKSVYDLKKPEVAKL-----FAPL 149

Query: 154 FKDQEEPSKGRFYNCPAGWTCELDNSEMLKSYGLESTYTNFRPG---TGPALDAAVLSSY 210
              + +   G     PAGW          K +G +  + +       T   LDAA    Y
Sbjct: 150 GGGKSQLLVG-----PAGWESTYIGQIKAKDFGFDGNFESVSTEASVTYAKLDAA----Y 200

Query: 211 KRGEPILFYYWSPTPLMGQVDLVKLEEKP------------------GVDKSVS------ 246
           K    ++FY ++P  +    DL +L+E P                  G  K +S      
Sbjct: 201 KAERGVIFYAYTPDWIFSAYDLRRLDEPPFDGYAQDNKKGDPLYKADGCWKFISPTVDAD 260

Query: 247 ---------------IKVGLSKTFHEQAPELVAVLEKVNLPIDLLNQNLGRMAKERIESP 291
                          + +  S    ++AP + A LE V++    LN  + ++ +E+  + 
Sbjct: 261 WLNKSSITCAYPDAKVHILASSALRQRAPRIAAFLENVSIDPASLNDLILKIEREKQPAD 320

Query: 292 KLAKIFLKEHPEVWHAWVS 310
             AK ++  +      W+S
Sbjct: 321 AAAKAWVAANQATVDRWLS 339