Pairwise Alignments

Query, 426 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  301 bits (772), Expect = 2e-86
 Identities = 158/426 (37%), Positives = 264/426 (61%), Gaps = 8/426 (1%)

Query: 3   ALILLGSFIALILIGMPVAYALGLSALIGAWWIDIPFQALMIQVAGGVNKFSLMAIPFFV 62
           +++++ + +    + + VA ++GL++++G    +      + ++   +NKF L AIPFF+
Sbjct: 2   SVVMVATMVLCFALSISVAVSIGLASILGIQVTNANMLISVKEMFNSINKFPLAAIPFFI 61

Query: 63  LAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLI 122
           LAG +M  GG+SRRLV FA  +VG V+GGL +  ++    F A+SGSSVA T ++G++LI
Sbjct: 62  LAGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAIGAILI 121

Query: 123 PEMERRGYPREFATAVTVSGSVQALLTPPSHNSVLYSLAAGGSVSIASLFMAGVVPGLLM 182
           P + + GYP  +A A+  + +   ++ PPS   +LY ++A   VSI  LF+AG  PG+L+
Sbjct: 122 PALIKHGYPTSYAAALQATSAELGVIIPPSIPMILYGVSA--EVSIGELFIAGFGPGILI 179

Query: 183 SACLMVLCLIFAKKRNYPKGEV---IPLKQALKICADALWGLMAMVIILGGILSGIFTAT 239
           S  LM+   ++ K + + K +    +P  +AL     A W L+  VIILGGI  G+FT T
Sbjct: 180 SLALMLFVWVYCKWKGWGKNDGEGRMPFGRALW---QAGWALLMPVIILGGIYGGVFTPT 236

Query: 240 ESAAIAVLWAFFVTMFIYRDYKWSELPKLMHRTVRTISIVMILIAFAASFGYIMTLMQIP 299
           E++A+AV +A  V M IYR+ K  +L  ++ ++V + +++M +IA A  F +++T   +P
Sbjct: 237 EASAVAVFYALVVGMVIYREIKLKDLYVILRKSVMSSAVIMFIIANAGLFAFLITRAGVP 296

Query: 300 AKITTLFLTLSDNRYVILMCINAMLLLLGTVMDMAPLILILTPILLPVVLGIGVDPVHFG 359
             I      +  +  + L+ +NA L ++G  ++ +  I++L PIL PV +  G+DPVHFG
Sbjct: 297 DAIGHWLQQVLQSPAMFLLGVNAALFVIGMFIETSAAIIVLAPILAPVAVHFGIDPVHFG 356

Query: 360 MIMLVNLGIGLITPPVGAVLFVGAAVGKVSIEKTVKALLPFYGVLFLVLMAVTYIPALSL 419
           +IM+VNL +G+ITPP G  LF    V ++S+++ V+ L+PF  V+   LM +TY+P +SL
Sbjct: 357 LIMVVNLALGMITPPFGVNLFAACTVARISLDRIVRHLVPFVLVIMACLMVITYVPWVSL 416

Query: 420 WLPSVV 425
            L  +V
Sbjct: 417 ALRDLV 422