Pairwise Alignments

Query, 320 a.a., C4-dicarboxylate ABC transporter from Pseudomonas simiae WCS417

Subject, 345 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

 Score =  120 bits (300), Expect = 6e-32
 Identities = 101/329 (30%), Positives = 156/329 (47%), Gaps = 29/329 (8%)

Query: 1   MDFKRTLLAAACFA----------LSSAAHALEIKFADIHPAGYPTVVAEENMGKALTQA 50
           M F+RTLL  A  A          ++ AA+  E K + +     P   A +     + + 
Sbjct: 1   MKFRRTLLGLAAAATALGMFSTGAMAQAAYKPEYKMSLVLGPPTPWGQAGKIWADMVKER 60

Query: 51  SNGELTFKYFPGGVL--GSEKEVVEQAQVGAIQMTRVSLGIVGPVVPDVNVFNLPFVFRD 108
           + G +  K +PG  L  G +       + G I M   S     P V  +N+F++PF+  D
Sbjct: 61  TQGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAVGSTINWSPQVKQLNLFSMPFLMPD 120

Query: 109 QAHMRKVIDGEIGDEILAKITDSEFGLVALAWMDGGTRNLY-TKKPVRKIEDLKGMKIRV 167
            A +  +  GE+G E+   +  +  G+V LAW + G R +  +KKP++   D+KGMKIRV
Sbjct: 121 YAAIDALTQGEVGKEMFKTLEKA--GVVPLAWGENGFREITNSKKPIKSPADIKGMKIRV 178

Query: 168 QGNPLFIEAFNEMGANGIAMDTGEIFSALQTGVIDGAENNPPTLLEHNHFQNA--KYYTL 225
            G+P++ + F  +GAN   M   +   AL +G +DG E NP  L      Q    K+ T 
Sbjct: 179 VGSPIYSDMFTALGANPTQMSWADAQPALASGAVDGQE-NPLFLFTVLKMQTVGQKFVTT 237

Query: 226 TEHLILPEPIVMSKITWNKLTPAQQDMVKKAAKAAQADERVLWDAKSASSETK---LKAA 282
             ++  P   V++K  W   TPA Q +V++AA  A  +E VL  A+    ET    LK  
Sbjct: 238 WGYVADPLVFVVNKEIWASWTPADQAIVRQAAIDAGKEEIVL--ARKGLVETDKPVLKDI 295

Query: 283 GVEFITV------DKKPFYDATAPVRAKY 305
               +TV      +++ F  AT PV  K+
Sbjct: 296 AGMGVTVTSLTPAEREEFVKATRPVYDKW 324