Pairwise Alignments

Query, 472 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 498 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  272 bits (695), Expect = 2e-77
 Identities = 171/474 (36%), Positives = 258/474 (54%), Gaps = 14/474 (2%)

Query: 2   RPRLKPLAALMLLALQGCSMAPTYQVPAVDLPAGYREQTSD------GPWHSAQPSD-QL 54
           R  L PL A ++LA  GC+  P+  +P +   A ++EQ  D        +  A PS+ Q 
Sbjct: 13  RTALLPLMAALVLA--GCATVPS-GLPEIQTTAQFKEQGKDQGATPPAGFTRAVPSESQP 69

Query: 55  APEWWTLYNDSRLNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLR 114
              WW  +ND  LN L ++    N D+ AA A    ++A A    A   PQI   A   R
Sbjct: 70  RGAWWLAFNDPTLNALVEKADIHNNDIQAAAARLAEARALARTADADRLPQIGLGAGANR 129

Query: 115 QRQSDSRPLRGDTQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARL 174
               D       T+P+   +   G + SY++DL+G++     A    A      L   RL
Sbjct: 130 GAGLDKAT--ASTRPATMTN--IGATFSYEVDLFGRLSGASKAARLDAAGREALLQSTRL 185

Query: 175 SLQHQLATLYVQLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAE 234
           ++Q Q A  Y+QL  LDA+  ++   ++ +R  L+L++ R +    +ELD+ R Q +++ 
Sbjct: 186 AVQAQTAQTYLQLRALDAERALVREQVEAYRDTLRLSQRREQAGDIAELDVARVQTEVSS 245

Query: 235 AKAQWDEIRGQRNLTEHAIGELVGVAASDFSLSPSPQLISLPGIPSQLPSHLLQRRPDIA 294
            ++    +  QR   EHA+  LVG +AS F L        LP IP+ +PS +L RRPD++
Sbjct: 246 TESDALALDRQRAQVEHALAVLVGDSASSFGLRTDEWSTVLPNIPAGVPSTVLMRRPDVS 305

Query: 295 AAERRVFAANANIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVNLPIFD 354
           AA+  V AA A +GVA+AAW+PD SLTG  G  +  +G+L     R W +G L++LPIFD
Sbjct: 306 AAQSAVLAAQARVGVAQAAWFPDISLTGAAGYASPEIGDLFKWSARSWGVGALLSLPIFD 365

Query: 355 GGRLSANERQAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQAAADAAQHT 414
           GGR  A  + A A+ + A A YR+Q L A +EVED LA +R LQ+++  +  A  +AQ  
Sbjct: 366 GGRREAGVQGANAQLDGALASYRTQALVAFQEVEDQLAAIRILQEQSVVQAQAVTSAQRA 425

Query: 415 QSLAMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGW 468
            SL+   Y+ G +S LD++ A+ + L+ +R    V++ Q QA+V LV A+GGGW
Sbjct: 426 TSLSDTRYRNGYISQLDLLDARRSELRNRRQALQVKSAQYQAAVALVRAIGGGW 479