Pairwise Alignments

Query, 472 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 494 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  283 bits (723), Expect = 1e-80
 Identities = 169/471 (35%), Positives = 254/471 (53%), Gaps = 8/471 (1%)

Query: 3   PRLK-PLAALMLLALQGCSMAPTYQVPAVDLPAGYREQTSDGPWHSAQPSDQLAP-EWWT 60
           PRL  PLA L  + + GC++ P Y+ P   LP  ++ +    PW  + P+D      WW 
Sbjct: 4   PRLAAPLALLAAMLVAGCAVGPDYKTPDTPLPVSWKLEE---PWRVSAPNDAADKGPWWR 60

Query: 61  LYNDSRLNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQSDS 120
            + D +L+ LQQQ L  +P LA A A    ++A  +   AG +PQ+    +  R R S +
Sbjct: 61  RFGDPQLDALQQQALAGSPTLAIANARLAQARATLAANAAGQYPQVGLGTRASRLRISAN 120

Query: 121 RPLRGDTQPS---VYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQ 177
           RPL     P+   V N      + SY++DL G+++  V    A A+ S  DL   RL L 
Sbjct: 121 RPLTNYATPNSTTVQNDFALSLNASYEVDLAGRVQRTVEGAKASAEQSAADLQNTRLLLS 180

Query: 178 HQLATLYVQLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKA 237
             +A+ Y  L   D +  ++ RS+   R+AL+L  +R++    S LD+ + Q+ L     
Sbjct: 181 ADVASSYFNLRSTDIELDVVTRSIALQRRALELVTARHDLGAVSGLDVAQQQSLLETTLT 240

Query: 238 QWDEIRGQRNLTEHAIGELVGVAASDFSLSPSPQLISLPGIPSQLPSHLLQRRPDIAAAE 297
           Q D +R QR+  EHA+  L G  A  FSL    + I  P +P  +PS +LQRRPD+A+AE
Sbjct: 241 QVDVLRKQRSQYEHALATLTGTPAPSFSLPVDLREIRPPAVPLGVPSEILQRRPDVASAE 300

Query: 298 RRVFAANANIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVNLPIFDGGR 357
           R + AANA IGVA AA+YP   ++  +G  ++ +  L +  +  W++G      +FDGGR
Sbjct: 301 RAMAAANAQIGVATAAFYPSIFISPTVGVDSRTIETLFNGPSLLWSVGVSATQVLFDGGR 360

Query: 358 LSANERQAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQAAADAAQHTQSL 417
           + AN   AKA ++    +YR  VL A++EVED +  L  L       QAA  AA+    +
Sbjct: 361 IRANVDFAKAGYDVTVGNYRRTVLTAMQEVEDGITGLSALDSATAQAQAAVTAARRVLDM 420

Query: 418 AMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGW 468
           A + Y+ GA +YLDV+TAQ + L  +R    ++ ++L  +V LV ALGG W
Sbjct: 421 ATSRYEGGASTYLDVITAQQSLLTVERQAAQLRGQRLLTAVFLVKALGGDW 471