Pairwise Alignments

Query, 472 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 484 a.a., putative Multidrug efflux MFS outer membrane protein from Pseudomonas putida KT2440

 Score =  215 bits (547), Expect = 3e-60
 Identities = 157/488 (32%), Positives = 242/488 (49%), Gaps = 32/488 (6%)

Query: 1   MRPRLKPLAALMLLALQGCSMAPTYQVPAVDLPAGYREQTSDGPWHSAQP-SDQLAPEWW 59
           M+P L+    L+ + L GC++ P +Q P  D  A  +     G   ++QP ++ L   WW
Sbjct: 1   MKPGLRLSPLLLAVLLTGCTLGPDFQRP--DSQAPQQWAPLQGEAAASQPQAEPLELRWW 58

Query: 60  TLYNDSRLNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQSD 119
             ++D+RL+ L Q++ + N DL  A A    S+A  S L A   P +  +A   R R S 
Sbjct: 59  ETFHDARLSALIQRVAERNLDLQMASARLLQSRALRSTLAADEVPSVDVNAGYSRARNSA 118

Query: 120 ---SRPLRGDTQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSL 176
              S P  G      +N         ++LDLWG++R QV A DA  + + +D     L+L
Sbjct: 119 DGLSDP-SGKAGKEAFNLWQGDLVAGWELDLWGRVRRQVEAADATVEVAENDRRGVLLAL 177

Query: 177 QHQLATLYVQLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAK 236
             + A  Y+QL  +     +   +L   R +L+L++ R    +A+ LD+ +A  Q+A  +
Sbjct: 178 LSETAGNYIQLRAVQHTLDVTQDNLRVARHSLKLSQDRQAEGVATRLDVAQASAQVASIE 237

Query: 237 AQWDEIRGQRNLTEHAIGELVGVAASDFSLS-------PSPQLISLPGIPSQLPSHLLQR 289
           ++   +  QR+   +A+  L                  P+PQ     G+PS+L     +R
Sbjct: 238 SRLPSLEAQRDDLINALSLLAAEPPRSLQAELLQGGELPAPQQKFAIGLPSELA----ER 293

Query: 290 RPDIAAAERRVFAANANIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVN 349
           RPDI  AE R+ AA A+IGVAKA +YP   L+G +G Q   + +     +R +A GP ++
Sbjct: 294 RPDIRQAEARLHAATASIGVAKADFYPSIRLSGSVGFQALQLSDFGGWDSRRFAFGPQMS 353

Query: 350 LPIFDGGRLSANERQAKAEFEEASAHYRSQVLKAVREVED-----NLAQLR--DLQQEAQ 402
           LPIF+GGRL       +A+ +EA+ +YR  VL A  E++D     N +QLR   L +  +
Sbjct: 354 LPIFEGGRLKGTLELREAQQQEAALNYRKVVLGAWHEIDDVLRLYNASQLRRDHLAEAVR 413

Query: 403 DEQAAADAAQHTQSLAMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVT 462
             + A + AQ         Y  GAV +L+V+T Q A L ++           QA VGL  
Sbjct: 414 QNRIALETAQ-------RQYVEGAVDFLNVLTVQGALLASEEQWIDSSAAVSQALVGLYK 466

Query: 463 ALGGGWHA 470
           ALGGGW A
Sbjct: 467 ALGGGWQA 474