Pairwise Alignments

Query, 389 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

Subject, 396 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  114 bits (286), Expect = 4e-30
 Identities = 98/357 (27%), Positives = 158/357 (44%), Gaps = 30/357 (8%)

Query: 51  PQVRVFQPQQNAAGDTLRLPAHLEAWSKAPIHARVSGYLKDWKADIGTQVKAGQILAEID 110
           P V V   +  +A     LP  + A+  A +  ++SG ++      G  V+AGQ+L EI+
Sbjct: 32  PSVGVVTLKTESAPLLNELPGRISAFETAEVRPQISGVIRRRLFTEGGTVQAGQLLYEIE 91

Query: 111 SPDLDQQMAQTHARLIQEQANARLAQTTATRWQNLLASHSVSRQEADEKTSNAAAAKANA 170
                  +AQ    L   QA  R     A R+++L+  ++VS+QE D+  + A  A+AN 
Sbjct: 92  DAPYRAALAQAQGSLANAQAAIRSTGLQAQRYKDLVGINAVSKQEYDDAAAAAQQARANV 151

Query: 171 EAAAADYARLSALESYKTIRAPFAGTITARNTDIGQLIKADTDSDPELFNIADTHQLRLY 230
            A           +++  IRAP +G I       G L++    +DP L  I  T   R+Y
Sbjct: 152 AAQQGAVQAAQVNQNFTRIRAPISGRIGRSLLTPGALVQTG-QADP-LTTIQRTD--RVY 207

Query: 231 VPVPQNYAAVIH-------------PGLEAELTVPE---HPGEHFKARLIGDSTAIDRRS 274
           V V Q+ A +I               G   +L +P    +PGE    RL      +D  S
Sbjct: 208 VDVTQSAAQIIDLKQAMKAGGISEAQGARIQLILPNGSVYPGE---GRLQFADVTVDSSS 264

Query: 275 GTLLAQFVADNPNGELLPGDYAEATLPIPADTHGVSIPASALIFRAQGTQVA-VLDAHNH 333
           G +  + +  N +G LLPG Y  A L     T  +  P   +   A+G   A V+   N 
Sbjct: 265 GAVTLRAIFPNADGLLLPGMYVRAKLIEGERTQAILAPQQGISRDARGRATAMVVGKDNK 324

Query: 334 VHLQTIHIGLDLGERLVIDQGLKPVDRVVD------NPPDALREGDPVQLADASGGA 384
           V ++ + +   +G++ ++  GLKP D+++        P   ++ G P Q+    GGA
Sbjct: 325 VEMRQVTVDRAIGDKWIVTSGLKPGDQLIVEGLVNLRPGTVVKPGAPQQVTAPEGGA 381