Pairwise Alignments

Query, 389 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score =  104 bits (260), Expect = 4e-27
 Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 12/309 (3%)

Query: 81  IHARVSGYLKDWKADIGTQVKAGQILAEIDSPDLDQQMAQTHARLIQEQANARLAQTTAT 140
           + +RV+G L       G +VKAG +LAEID       + Q    L Q QA  + AQ    
Sbjct: 95  VRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQNQAQLKNAQVDLA 154

Query: 141 RWQNLLASHSVSRQEADEKTSNAAAAKA--NAEAAAADYARLSALESYKTIRAPFAGTIT 198
           R++ L A  S+++Q  D   +  A  +       A  + ARL+    +  IRAP +G + 
Sbjct: 155 RYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKTNQAQVNDARLNL--DFTQIRAPISGRVG 212

Query: 199 ARNTDIGQLIKADTDSDPELFNIADTHQLRLYVPVPQNYAAVIHPGLEAELTVPEHPGEH 258
            R  D+G L+ A+  +   L  I  T  + +   +P+   + +     +  ++P    + 
Sbjct: 213 LRQLDLGNLVAANDTT--ALVVITQTEPINVAFTLPETELSTVLERYRSGASLPVEAWDR 270

Query: 259 FKARL-----IGD-STAIDRRSGTLLAQFVADNPNGELLPGDYAEATLPIPADTHGVSIP 312
             ++L     +G     ID  +GTL  +   +N +  L P  +    L        V  P
Sbjct: 271 GDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFVNVRLLADTLKQVVMAP 330

Query: 313 ASALIFRAQGTQVAVLDAHNHVHLQTIHIGLDLGERLVIDQGLKPVDRVVDNPPDALREG 372
           A+A+ F   GT   V++  + V+++ + +G   GE  VI  GLK  DR+V    D LREG
Sbjct: 331 AAAIQFGNDGTFAYVVNEQSTVNVRKLKVGASDGENSVILDGLKAGDRLVLEGTDRLREG 390

Query: 373 DPVQLADAS 381
             V++ + S
Sbjct: 391 TKVEVVEDS 399