Pairwise Alignments

Query, 389 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 92/351 (26%), Positives = 156/351 (44%), Gaps = 36/351 (10%)

Query: 48  AAIPQVRVFQPQQNAAGDTLRLPAHLEAWSKAPIHARVSGYLKDWKADIGTQVKAGQILA 107
           A  PQV V   Q  A   T  LP    A+  A +  +V+G +       G++VK GQ L 
Sbjct: 32  AQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIILKRLFKEGSEVKEGQQLY 91

Query: 108 EIDSPDLDQQMAQTHARLIQEQANARLAQTTATRWQNLLASHSVSRQEADEKTSNAAAAK 167
           +ID        A   A L   +AN    ++ A R++ L+   +VS+QE D+  +    A+
Sbjct: 92  QIDP-------AVYEATLANAKANLLATRSLAERYKQLIDEQAVSKQEYDDANAKRLQAE 144

Query: 168 ANAEAAAADYARLSALESYKTIRAPFAGTITARNTDIGQLIKADTDSDPELFNIADTHQL 227
           A+ ++A  D         Y  + AP +G I   +   G L+     S+ +   +A   QL
Sbjct: 145 ASLKSAQIDL-------RYTKVLAPISGRIGRSSFTEGALV-----SNGQTDAMATIQQL 192

Query: 228 -RLYVPVPQNYAAVIHPGLEAELTVPEHPGEH-------------FK--ARLIGDSTAID 271
             +YV V Q+ A ++    + E    +  G++             FK   RL     A+D
Sbjct: 193 DPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLFKQEGRLEFSEVAVD 252

Query: 272 RRSGTLLAQFVADNPNGELLPGDYAEATLPIPADTHGVSIPASALIFRAQGTQVA-VLDA 330
             +G++  + +  NP+  LLPG +  A L    + + +  P   +    +G   A V++ 
Sbjct: 253 ETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTRDLKGAPTALVVNQ 312

Query: 331 HNHVHLQTIHIGLDLGERLVIDQGLKPVDRVVDNPPDALREGDPVQLADAS 381
            N V L+ +     LG   +I++GL P DR++      +R G  V+++DA+
Sbjct: 313 ENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVKVSDAT 363