Pairwise Alignments

Query, 342 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 338 a.a., AraC-type DNA-binding domain-containing proteins from Variovorax sp. SCN45

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 90/324 (27%), Positives = 134/324 (41%), Gaps = 33/324 (10%)

Query: 27  DPQPLLLQYGLDPARLAEAGARLSIPRYMRLGHAAIQLTGDPGLGL-----RMGQLSRLS 81
           D   +  Q G+ P  L +  AR++  +++R+        GD  LGL     R G L  L 
Sbjct: 27  DIDAIATQAGISPLLLRQGAARVTREQFVRMYEGVALFMGDEMLGLWSRPIRAGALKYL- 85

Query: 82  QGGLAGVTAAQAPNVREAARALTRFEALYGSNYRGQSSFVEDAEGAWL--RFYSISPYNA 139
                G++   AP++  A    TRF  L   +YR + +         +  R    +P   
Sbjct: 86  -----GLSLLDAPSLMVAMYRFTRFWNLLLDDYRLRMARANGVATVTIAPRLDGTTPTPF 140

Query: 140 YNRFVVDSI--IAGWLQQLSSLAQQPVQAQRIDIEFEAPEYSDQYSVL--GDVHFGAEAN 195
            +  +V  I  +A WL       Q PV    +   F  P   D+Y+ L  G V FG  A+
Sbjct: 141 GHELMVKLIHGVASWLVG----RQLPVL--EVGFAFRRPARFDEYANLFPGPVRFGQAAS 194

Query: 196 QLRLNQQTLALRNPQHCPSTWNLLLQLCER---ELVQLTRTR-SLRERITRLLGPMLNGG 251
            +  ++  L     Q    T   LL    R   + + +T    + R  +   +   L  G
Sbjct: 195 SVSFSEAVLR----QTFRRTRGELLDFVRRAPDDWIFVTFDHDTTRSSVRDFVAARLATG 250

Query: 252 REPDLEEVAARLKLPTWTLRRKLADEGTQFRAILNDTRRDLAMTYIRDTELAFGEIAYLL 311
               L + A  L +    L RKLA EGT FRA+  + RRD+A+  +  T      IA  +
Sbjct: 251 --VTLGDAATSLHMSERALSRKLASEGTSFRAVKEEVRRDVAIQRLVKTREPIDLIAASV 308

Query: 312 GFASAQAFQRAFRRWNNQTPGEFR 335
           GF +  AF RAFR W   TP  +R
Sbjct: 309 GFDNTPAFHRAFRTWTGSTPRGYR 332