Pairwise Alignments

Query, 786 a.a., fimbrial assembly protein from Pseudomonas simiae WCS417

Subject, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

 Score =  103 bits (256), Expect = 5e-26
 Identities = 130/562 (23%), Positives = 226/562 (40%), Gaps = 32/562 (5%)

Query: 233 SVRLGGVQFSRDFAVRPDLVTYPLPQFAGEAAVPSSVDLFINGYKSDSALLQPGPYTLTN 292
           SV + GV+ + D  +  D      P   G A   + V+++ +GY   S  +  GPY + +
Sbjct: 263 SVPISGVRVASDMGMLADNQRGYAPIIRGVAQSRAKVEIWQHGYPIYSTYVSAGPYAIDD 322

Query: 293 VPFINGAGEAVVVTTDALGRQVSTTVPFYVTSTLLQKGLTDFSVAAGSLRREYTLKDFAY 352
           +    G+GE  VV T+A G+      P+   S LL+ G+  +S   G       L+    
Sbjct: 323 LSTA-GSGELEVVVTEADGQVRRFIQPYSTMSNLLRPGVWRYSATVGRYNPSSDLET--- 378

Query: 353 GPGVASGTFRYGYSDNLTLESHAEASSDLTLGGLGGNLRLGNFGVLNTAVSQSQF----- 407
            P +  GT   G   + T+     AS     G LG +  LG+ G +   V+Q+       
Sbjct: 379 -PLLWQGTLAVGSYWDTTVYGGLMASEFYRAGNLGFSKDLGHLGAVAFDVTQASSAIDNA 437

Query: 408 EGRGGQQMSLGYQY-------NSMR---YSLSYQRVERRDEYADLTLVDTPYASLSKRSE 457
             R  Q  S   +Y        ++R   Y  S Q     DE       DT ++   +   
Sbjct: 438 HEREVQGSSYALKYAKAFTTQTNLRFAGYRYSTQGYRDFDEVVRQRSQDTTFSGSRRSRL 497

Query: 458 QVTLSLNLERFGSLGVGYFDVQAADDSRTRLLNLSWSKPLWRNTSFYLSANREI-----G 512
           + ++  +L R  SL +          + T+           R   + L A++ +      
Sbjct: 498 EASVHQSLGRTSSLTLTLSQQDYWRSNATQRQYQFNFNTQHRGVGYNLFASQSLTDRYGN 557

Query: 513 DSNWAMQAQLVIPFDLNGSLALSTERSKDGASRQRLNYSSAVPSEGGVGYNLGYAQGDGP 572
           D  + +   + + F    +     + + +G S QR   S +  S   + Y+   ++ D  
Sbjct: 558 DRQFGLSVTVPLHFGHRANATFDLQHNANGYS-QRATLSGS-DSARALSYSTSLSR-DEH 614

Query: 573 AYRQADLTWRLQS--VQLQAGVYGSSDAETRWADASGSLVWMGGDTFAANRINDAFVVVS 630
           A + A L+   Q+    + AG   + +  +   +ASG+++           + D   ++ 
Sbjct: 615 ARKTAALSLGHQAPYASVSAGYTEADNYRSLSLNASGAVLLHADGLEFGRYLGDTAALIE 674

Query: 631 TQGFAGIPVRYENQLVGETDRNGHLLVPWSSAYYRAKYEIDPLNLPLNVQSPNVEQRVSV 690
             G A + +  +N     T+  G+ L+P+   Y      ++   L  +V+  N   +V  
Sbjct: 675 VPGVANVGL--QNATGTRTNSRGYALLPYLQPYRTNSVVLETDRLDPDVEIDNGIAQVVP 732

Query: 691 RRGSGYLLEFPLRRVLAASVTLVDTQHQELPLGSLLVHEQSNQQAVVGWDGLVYLENLSA 750
           R+G+     F  RRV    +TL DTQ Q LP G+ ++ E   Q  +VG  GLV L N S 
Sbjct: 733 RQGAVVKHRFEARRVSRLVLTLHDTQGQPLPFGAQVLAENGTQLGMVGQAGLVMLTNPSQ 792

Query: 751 HNTLQVTLGDGRTCQARFDIDE 772
              LQV+ G+      +  +DE
Sbjct: 793 EQPLQVSWGEQPNAGCQVHLDE 814