Pairwise Alignments

Query, 245 a.a., transmembrane anti-sigma factor from Pseudomonas simiae WCS417

Subject, 250 a.a., putative Transmembrane regulator PrtR from Pseudomonas putida KT2440

 Score =  199 bits (505), Expect = 6e-56
 Identities = 105/237 (44%), Positives = 154/237 (64%), Gaps = 3/237 (1%)

Query: 1   MISLPPSERDLHAYVDHQLLESDRRVLETYLAAHPDVAAQVHAWQHDAQLLRAALGGALQ 60
           M  L PS+ +LHA+VD +L    R  ++ +LAA+P  AA+V  W+ DA+ LR AL G  +
Sbjct: 1   MTRLIPSDDELHAFVDERLEPVRRAEVQAWLAANPQAAARVEGWRADARRLRTALAGLGE 60

Query: 61  QPANPDLDPALIRQRLKRQSRRQFATAAVLLLAVSLGGIGGWHAREATQP-AQLPMADAM 119
            P    LD   +R++L+++ +R++A AAV++LA+ +GG+GGW  R+AT     LPMADA+
Sbjct: 61  LPGAAQLDLGQLRRQLRQRRQRRWAAAAVVMLALGVGGLGGWQVRDATLARVDLPMADAV 120

Query: 120 QAFRLFAQDGIMPADYKVQGGGTMQAWLDRYFNQAHRLPDLSTSGFTPVSGRLLTTEQGA 179
           QA RLFA  G    D +    G ++ WL R+F++  +LPDL+  GF PV  RLL+ EQG 
Sbjct: 121 QAHRLFA--GSEALDIQASDPGQLRDWLGRHFSRVGQLPDLAGYGFKPVGARLLSNEQGP 178

Query: 180 AAMVLYEDPQGRRISFYIRPPGPENGFLPRGSRSADGLQAQYWSGAGYNYALVSPVD 236
           AA++++ED +G+RIS ++R PG     +P G R    L+A+YWS   YN+ALVS  D
Sbjct: 179 AALLVFEDGKGQRISLFLRSPGNLYRRMPDGQRVDGQLEARYWSHGAYNFALVSAAD 235