Pairwise Alignments

Query, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 93.2 bits (230), Expect = 3e-24
 Identities = 64/159 (40%), Positives = 88/159 (55%), Gaps = 7/159 (4%)

Query: 3   ELDEQLRELIPRLRRFAVSLTRNASSADDLVQSTLERAIISWA--DKRVEG-DLRAWLFS 59
           E    L  ++P+LR FA SL  N  +ADDLVQ T+ +A   W   ++ V G + RAW F 
Sbjct: 18  EFKAALAAVLPQLRAFARSLAGNRDTADDLVQETMLKA---WRARERYVAGTNFRAWAFV 74

Query: 60  ILYRQFLDAHRRTRRYARMLEFFTGRDDAQPS-VERTVIAQSTLQAFDQLNTEQRALLLW 118
           IL   FL   RR R      E    R  A P+  E++V  +  ++A  QL   QR  L+ 
Sbjct: 75  ILRNHFLSEMRRRRFVGEWDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALIL 134

Query: 119 VSVEGLSYKEIAEILEVPIGTVMSRLSRARQALRLLSDG 157
           V   G+SY+E AEI+ V +GT+ SR++RAR AL  L +G
Sbjct: 135 VGAGGISYEETAEIIGVAVGTIKSRVARARVALEALLNG 173