Pairwise Alignments

Query, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 168 a.a., ECF family sigma factor from Agrobacterium fabrum C58

 Score =  103 bits (258), Expect = 1e-27
 Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 4/170 (2%)

Query: 1   MHELDEQLRELIPRLRRFAVSLTRNASSADDLVQSTLERAIISWADKRVEGDLRAWLFSI 60
           M +  +++   IP LRR+A +LT +  +ADDLVQ  LERAI   A  R +G LR WL+ +
Sbjct: 1   MPDFLDEMTSCIPALRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRV 60

Query: 61  LYRQFLDAHRRTRRYARMLEFFTGRDDAQPSVERT--VIAQSTLQAFDQLNTEQRALLLW 118
           L   + +  R ++R  + +      +       +T  V      +A ++L+ E R  LL 
Sbjct: 61  LVNVYRNNLRGSKRRPQQIPIDDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLL 120

Query: 119 VSVEGLSYKEIAEILEVPIGTVMSRLSRARQALRLLSDGEIASPSLRILK 168
           V VEGL+Y E A ILE+P+GT+MSRL RAR AL  ++  +   P+L+++K
Sbjct: 121 VVVEGLTYAEAANILEIPLGTLMSRLGRARTALARMTQED--QPNLKVIK 168