Pairwise Alignments

Query, 575 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 832 a.a., Outer membrane protein assembly factor BamA from Xanthobacter sp. DMC5

 Score = 62.8 bits (151), Expect = 5e-14
 Identities = 118/568 (20%), Positives = 205/568 (36%), Gaps = 98/568 (17%)

Query: 82  ESDVKGGNNPRLILTIDPGEPVHLRNVTIRVDGPAADLKAFRVPVSNDLKSGAVLNHGHY 141
           E D  GG     ILT    E    R   + V     DL A  +      + G + N    
Sbjct: 254 ELDPAGGG---YILTFTLEEGDQYRFGKVDVISNIRDLAADSLKRVVRAQDGQIYNAELV 310

Query: 142 EDAKRLIQNQASRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYTLGKVSFAGDTPF 201
           E +   +  +AS+ G+   +  R +   D Q+ + ++  + + GPR  + ++   G+T  
Sbjct: 311 EKSVENLTIEASKSGYAFAQ-VRPRGDRDFQSKLINVSFVIEEGPRVYIERIEIRGNTRT 369

Query: 202 DEELLHRMVPFKSGTPYDSELIAELNQNLQASGFFEGVRVDAAPAASTNDIIPVAVRLET 261
            + ++ R      G  Y+  L+    + L+  G+F+ V++   P ++ + +I +AV +E 
Sbjct: 370 RDYVIRREFDIGEGDAYNRVLVDRAERRLRNLGYFKNVKITTEPGSAPDRVI-LAVDVED 428

Query: 262 RKPRTMGLGLGFSTDVGPRGKANWTR-------HWVNPQG----HSYGWEAELSAP---- 306
           +      +  G+ST  G  G+ +           +V   G    +S G E   + P    
Sbjct: 429 QPTGEFSISGGYSTADGIIGEVSLGEKNFLGRGQYVKVSGTLGQYSQGAEFSFTEPYFLG 488

Query: 307 -RQNVGL---WYDIPLDPPLTDKLRFAGGYQNEEIANTDTVSKLLTLGPEWHS-KLPSGW 361
            R   G    W +              GG     +  TD ++  L       +  L + +
Sbjct: 489 YRLAAGFDLYWKNTETTSYTPYGTNMVGGGLRFGLPITDEITLALRYNLYQRTINLCANY 548

Query: 362 TRVISLKYQ------REEYRLGNDSGLSNLVMPGVSYSYLRSDNRIDPHNGYRLQFDTKV 415
               ++ Y           R     G +     G + S+   DN  +P  G   +    +
Sbjct: 549 GEAYTVPYNYCATSISWAIRDAAAQGATITSALGYTLSFNSLDNNQNPTQGIYAELKQDL 608

Query: 416 AKEGLGSDTNLLYGTALVKGLTTLWDNHRFLARAQVGGSATNGYKSVPPSLRFFAGGDQS 475
           A  G+G D N +  T  ++  T L  +   + RAQ G  ++ G + +     F+  G   
Sbjct: 609 A--GVGGDVNFIRTTGDIRHYTPLPADSVLILRAQGGYVSSWGNQDLDVLDNFYM-GPNL 665

Query: 476 VRGYEYQTLSPE-------------------NDRGDRVGGRYMVALSAEYQYSIA----- 511
           VRG+    + P                    ND+ + +GG     +SAE Q+  A     
Sbjct: 666 VRGFAPSGIGPRDIAPCAASNKGTPLAYNCANDQLNALGGTTYWGVSAEIQFPFAFLPKD 725

Query: 512 EKWRIATFIDQGNSFN----------------------NL------------------DL 531
              + A F D G+ FN                      NL                  D 
Sbjct: 726 IGMKGAIFADAGSLFNFDGPTTFKGVPNYNGSNFYGNPNLVTCPGNAASAPKSNVCVYDD 785

Query: 532 PSLKTGVGVGIRWVSPVGPIRLDLAHAL 559
            ++++ VGV + W SP GP+R D A  L
Sbjct: 786 DTVRSSVGVSLIWQSPFGPLRFDYAWVL 813



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 130 LKSGAVLNHGHYEDAKRLIQNQASRYGFFSGRFTRQKLAVDPQAGVADIELIYDSGPRYT 189
           LKS    +       + L++    + G+   R       +DP  G   +    + G +Y 
Sbjct: 216 LKSTDAYDPDRVNSDQELLRRFYLKNGYADFRIIGATAELDPAGGGYILTFTLEEGDQYR 275

Query: 190 LGKVSFAGD-TPFDEELLHRMVPFKSGTPYDSELIAELNQNL 230
            GKV    +      + L R+V  + G  Y++EL+ +  +NL
Sbjct: 276 FGKVDVISNIRDLAADSLKRVVRAQDGQIYNAELVEKSVENL 317