Pairwise Alignments

Query, 828 a.a., fimbrial protein from Pseudomonas simiae WCS417

Subject, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

 Score =  444 bits (1142), Expect = e-128
 Identities = 291/843 (34%), Positives = 445/843 (52%), Gaps = 49/843 (5%)

Query: 5   KRDSLAPLLIAVGFSSVCHADGDEHFNTSFLQG------AAASVDLQSLLASSSVLPGNY 58
           +R +L  LL +    S  ++  D  F + FL+       AA++  L  L +   + PG Y
Sbjct: 14  QRSALLCLLGSSTLLSAPYSQADSGFQSGFLRQVPGQPQAASAWSLSMLTSDQGLAPGRY 73

Query: 59  RVDLYGNDTLVGRRDIDFRRNPSNGRVEACLTLEMLQQVGVDIGALQANGKLVDTDPNAC 118
           RV++  N    G+ ++DF+  P +G ++ CL   +L + G+ + AL AN    +   +AC
Sbjct: 74  RVEVQVNLEPAGQHELDFQPGP-DGELQPCLPARLLGEWGMRLDAL-ANP---EDQASAC 128

Query: 119 LDLPALIEHASVRYDVPRLRLLVSVPQRAMERGRRGYVDPALWDDGVPAAFMNYQLSS-N 177
           LDL  ++  A + +    L L +S+PQ +M R     VDP+ WD G+ AAF+NYQ S+ N
Sbjct: 129 LDLLTVVPGAQIVFTPTELHLAISIPQISMRRNTANQVDPSRWDSGINAAFINYQASTLN 188

Query: 178 RSSNDANTTLSNNLGLRNGINLGGWRLRNESNFSSSTGRSSTFKSNRSYLQHDLTALKGQ 237
             +  +    SN+L L +GINLG WRLR+  ++   +   + +   ++Y Q D+      
Sbjct: 189 GRNRSSGRYTSNDLYLNSGINLGEWRLRSTQSWRQGSQGKTEWTRAQTYAQRDIPGTLAN 248

Query: 238 FSAGDIFSDADLFDSVRYRGLKMASDDGMRADSERGYAPIIRGVAQSSATVEIRQNNYIL 297
            + G+ F+D ++F SV   G+++ASD GM AD++RGYAPIIRGVAQS A VEI Q+ Y +
Sbjct: 249 LTIGETFTDREVFRSVPISGVRVASDMGMLADNQRGYAPIIRGVAQSRAKVEIWQHGYPI 308

Query: 298 YTANVPPGPFEISDIYPSGSNGDLEVTVIEADGRRRVTVQAFSSLPIMVREGQVKYSLSA 357
           Y+  V  GP+ I D+  +GS G+LEV V EADG+ R  +Q +S++  ++R G  +YS + 
Sbjct: 309 YSTYVSAGPYAIDDLSTAGS-GELEVVVTEADGQVRRFIQPYSTMSNLLRPGVWRYSATV 367

Query: 358 GQYNSNSDGQKTPQFVSSTLAYGISSNLSGIVGVQATQDFQALSVGAGRNTS-IGAVSLD 416
           G+YN +SD  +TP     TLA G   + +   G+ A++ ++A ++G  ++   +GAV+ D
Sbjct: 368 GRYNPSSD-LETPLLWQGTLAVGSYWDTTVYGGLMASEFYRAGNLGFSKDLGHLGAVAFD 426

Query: 417 MTHSAS---RTFGRQVTGNSLRALYAKTFTGTDTNFTLAAYRYSTEGYRTLTEHVEELSS 473
           +T ++S       R+V G+S    YAK FT T TN   A YRYST+GYR   E V + S 
Sbjct: 427 VTQASSAIDNAHEREVQGSSYALKYAKAFT-TQTNLRFAGYRYSTQGYRDFDEVVRQRSQ 485

Query: 474 DGRTHLGNSKTRTDLTVNQSLGRNQQFGSVYLNASDQRYWGRGGAQ-SLSAGYSNYWRDV 532
           D  T  G+ ++R + +V+QSLGR     S+ L  S Q YW     Q      ++   R V
Sbjct: 486 D-TTFSGSRRSRLEASVHQSLGRTS---SLTLTLSQQDYWRSNATQRQYQFNFNTQHRGV 541

Query: 533 TYNLSATHTKDVGNYGPSNNDTLINLSLSFPLGSKPRAPRAFVSASTQKDNDTTQMGVNG 592
            YNL A+ +     YG   ND    LS++ PL    RA   F            Q   NG
Sbjct: 542 GYNLFASQSL-TDRYG---NDRQFGLSVTVPLHFGHRANATF----------DLQHNANG 587

Query: 593 YLTEDSNT--------YYSLQAGNSSTGGSTGSANLSTRTALMDISGGYSQGRGYSAQNL 644
           Y    + +         YS           T + +L  +     +S GY++   Y + +L
Sbjct: 588 YSQRATLSGSDSARALSYSTSLSRDEHARKTAALSLGHQAPYASVSAGYTEADNYRSLSL 647

Query: 645 NVAGSVVAHAGGINLGQTVGETFALAQVEGVPGVKISSFSGARTGSNGYAVIPNTQPYRV 704
           N +G+V+ HA G+  G+ +G+T AL +V GV  V + + +G RT S GYA++P  QPYR 
Sbjct: 648 NASGAVLLHADGLEFGRYLGDTAALIEVPGVANVGLQNATGTRTNSRGYALLPYLQPYRT 707

Query: 705 NWISLDTRDLGADIEIDNATQQVVPRRGAVVLARYASKSGRRVQFALFDAQHRPIPFGAS 764
           N + L+T  L  D+EIDN   QVVPR+GAVV  R+ ++   R+   L D Q +P+PFGA 
Sbjct: 708 NSVVLETDRLDPDVEIDNGIAQVVPRQGAVVKHRFEARRVSRLVLTLHDTQGQPLPFGAQ 767

Query: 765 LESMAGKQMAIADPGGKALALVEEDTGTLVIKWADQ---HCQAPYALGERNKALNYERVA 821
           + +  G Q+ +    G  +         L + W +Q    CQ      +      Y +  
Sbjct: 768 VLAENGTQLGMVGQAGLVMLTNPSQEQPLQVSWGEQPNAGCQVHLDELDAPVVDGYRQQT 827

Query: 822 LTC 824
           LTC
Sbjct: 828 LTC 830