Pairwise Alignments

Query, 483 a.a., multidrug RND transporter from Pseudomonas simiae WCS417

Subject, 503 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  288 bits (738), Expect = 2e-82
 Identities = 166/475 (34%), Positives = 263/475 (55%), Gaps = 5/475 (1%)

Query: 4   RALCLVLVAMSMAGCANYSGLDTQGKRLDASTLQAGKSLSGMTLSSAAWPTADWWKSLGD 63
           + L +  ++++++GC    G+  QG+ L+A+TL    ++       A WPT  WW++ GD
Sbjct: 10  KTLSVWALSLAISGCIGTGGIAPQGQSLNANTLATDDAIQNAA-QDAHWPTGQWWQAYGD 68

Query: 64  PQLDGLIQEALQNSPDMQVASARAHQAEAAAYAANAERMPTLDASAGVSRSRLAKDQ--D 121
           PQL+  +  A Q+SP M +A+AR  +A A A  A +     +++   + R    KDQ   
Sbjct: 69  PQLNRWVDLATQHSPSMAMAAARVREARAMAGVAESAESLQINSDTTLKRHNWPKDQFYG 128

Query: 122 PRGQGDAYSTVRNIGASFNYNFDLWGGQRAAWEAALGEARAAQVDQQAARLTLAANVAKA 181
           P     A +   N     +Y  DLWG +  A E A+  A  +  + + A+L L  NV +A
Sbjct: 129 PGELSGANTWDNNASLGLSYALDLWGRESNATERAVDLAHMSAAEARQAQLELQNNVVRA 188

Query: 182 YSDLGQAHIVRDLANDDLKRTRQMLDLSKRRLDSGIDSHYQYQQTESLEASSQSQLIDAE 241
           Y  L   +  RD+    L + +Q+LDL+  RL++GI +H+   Q E+    +  QL   +
Sbjct: 189 YIQLSLHYANRDIVAATLAQQQQILDLANTRLNAGIGTHFDVSQAETPLPETHRQLDALD 248

Query: 242 KQLQSAKIALAVLLGKGPDRGNELARPHVLKPSAVAVPSVLPAELLGRRPDLIAARWRVE 301
           +++  ++  LA L GKGP  G +L RP +   + + +PS LPA+LLG+RPD++A RW+V 
Sbjct: 249 EEIALSRNQLAALAGKGPGEGAQLQRPSLSLAAPLKLPSSLPAQLLGQRPDVVARRWQVA 308

Query: 302 AAGKSIDASKTRFYPNLNLSASAGAESLLGDAM-FGSASRF-FNIAPTISLPIFDGGRLR 359
           A  + ID +   FYPN++L  S G  +  G  + F +  +F +N+ P I+LPIFDGGRLR
Sbjct: 309 AQARGIDVAHAGFYPNVDLVGSLGYMATGGGMLEFLAGKKFNYNVGPAITLPIFDGGRLR 368

Query: 360 ADLDARDADYDLAVAQYNKTLVQALGDIGNTLSQLRDTGRQIQAQQHAADIAQQSYDTGV 419
           A+L    A YD+AVAQYN+TLV AL  I + L +     +Q      +   AQ++YD  +
Sbjct: 369 AELGEASAGYDIAVAQYNQTLVNALKGISDQLIRRESMDKQAAFAAQSVASAQKTYDIAM 428

Query: 420 QRYSAGIGNYLDVLSIEQQLLQAQRQLATLNAAQIDLSIQLMQALGGGYSADNVA 474
             Y  G+ +YL+VL+ +  L   Q+    + AA++    +L+ ALGGG  A + A
Sbjct: 429 IAYQRGLTDYLNVLNAQTLLFHQQQIEQQVQAARLSAHAELVTALGGGLGAGDDA 483