Pairwise Alignments

Query, 349 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 347 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  221 bits (564), Expect = 2e-62
 Identities = 138/356 (38%), Positives = 202/356 (56%), Gaps = 18/356 (5%)

Query: 1   MSIPVAQDT----APLLLIQRRIPWALIGLLALAFIVVPLWGNDYWLN-AILIPFLVLSL 55
           M I  A++T      LL+   +  W  +G+L    ++ P   N YWL  A L+   V S 
Sbjct: 1   MRIATAKETYIADEGLLVTSTQRAW--MGVLLATLVLAPFVLNQYWLYLACLVAINVASA 58

Query: 56  AGLGLNLLTGYTGQTSVGAAGFMAVGAFATYGFLLRLPELGLPVAL--LGGGIISALVGL 113
            GL  N+LTGYTG  S+G A FMAVGA+    F     ++G P  L  L  G++SALVG+
Sbjct: 59  TGL--NILTGYTGLVSLGQAAFMAVGAYTVAFFE---GQVGTPFLLNILAAGLVSALVGV 113

Query: 114 LFGLPSSRIKGFYLMVTTLAAQFFLEWLFVKFPWFYNYGSSGTISAPKLALFGHDLNTPL 173
           L G+PS R+KG YL + T+AA   L ++F    W    G    I+     LFG +L +P 
Sbjct: 114 LVGIPSLRVKGLYLAIATIAASVILHFVFTH--WVSVTGGVRGINVVPARLFGLELASPF 171

Query: 174 GRYLLTLVTVLLLTWTAINLVRSQVGRNWMAIRDMDTAAAVVGIPVVRYKRLAFAVSSFY 233
             Y + +    L+   A NL R+++GR ++AIRD D +A V+GIP++RYK ++FA+SSFY
Sbjct: 172 ALYFVIVPITCLMVLGAANLFRTRIGRAFIAIRDRDISAEVLGIPLLRYKLMSFALSSFY 231

Query: 234 LGIAGALWAFAYLGTASASSFDINRSFQILFIIIIGGMGSIAGNFVGAAFISLLPIFLSH 293
            G+AG +WA+ +    +  SF    S   L  +I+GG+G+I G+ +GAAF++L+P  L +
Sbjct: 232 AGVAGGMWAY-FFRVVTPESFPFATSIFFLAAVIVGGLGTIIGSVLGAAFMTLVPELLKY 290

Query: 294 AGQALFGGSVDAG-QLQNLQKIIFGVLIIVFLIKEPEGLIRLLHNLRDRVRQWPLR 348
               L     +AG  L  ++ I+FG LII+FL+ EP GL  ++   R     WP R
Sbjct: 291 VVDWLAPIFPNAGAALSPVRTIVFGALIILFLVFEPHGLAEMVRRARRFFHLWPFR 346