Pairwise Alignments

Query, 349 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 339 a.a., Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  129 bits (323), Expect = 1e-34
 Identities = 99/294 (33%), Positives = 144/294 (48%), Gaps = 26/294 (8%)

Query: 11  PLLLIQRRIPWALIGLLALAFIVVPLWGNDYWLNAILIPFLVLSLAGLGLNLLTGYTGQT 70
           PL + + R P AL+ L+  + + +PL      L   +   L+ ++A L  NLL GYTG  
Sbjct: 6   PLPVAKGRAP-ALLSLVVASLVALPLLLPSATLATEI---LIFAMAALACNLLLGYTGLL 61

Query: 71  SVGAAGFMAVGAFATYGFLLRLPELGLPVALLGGGIISALVGLLFGLPSSRIKGFYLMVT 130
           S G   F  VGA+     ++ L + G+  ALLG  +  A + LL G  + R  G Y ++ 
Sbjct: 62  SFGQGIFFGVGAYGAALLMIHL-QWGMFAALLGAAVFGAFLALLVGALAIRRTGIYFVML 120

Query: 131 TLAAQFFLEWLFVKFPWFYNYGSSG---------TISAPKLALFGH---DLNTPLGRYLL 178
           TLA        F +  +F  Y  SG          +  P + + GH   DL  P   Y+ 
Sbjct: 121 TLA--------FSQMAYFLAYTLSGWTGGDNGLLDVPRPNIEIAGHVLVDLADPRHFYVF 172

Query: 179 TLVTVLLLTWTAINLVRSQVGRNWMAIRDMDTAAAVVGIPVVRYKRLAFAVSSFYLGIAG 238
             V  LL+   A+ ++RS  G   +AIR+ +T AA +G     +K L F +S    GIAG
Sbjct: 173 VAVLFLLIFAAALRVIRSPFGSTLLAIRENETRAAAIGYDTRHFKILVFMLSGAITGIAG 232

Query: 239 ALWAFAYLGTASASSFDINRSFQILFIIIIGGMGSIAGNFVGAAFISLLPIFLS 292
           AL+A   L  A  S+ D+  S  IL + I+GG GS+ G+ +GA  I LL   LS
Sbjct: 233 ALYAM-LLHFAPLSNIDLMMSENILIMTIVGGTGSLFGSLLGAGAIVLLGDVLS 285