Pairwise Alignments

Query, 415 a.a., transporter from Pseudomonas simiae WCS417

Subject, 397 a.a., multidrug efflux transport system - membrane fusion protein from Pseudomonas putida KT2440

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 84/391 (21%), Positives = 152/391 (38%), Gaps = 68/391 (17%)

Query: 8   LLGAVLILLLGGAVLTLRSPASDPVGTQE------QWQAVKPEALVHQIGLVGKIEPDTT 61
           LLG +L+L+L G            VGT        +W     +A V+             
Sbjct: 24  LLGLLLLLILAG------------VGTWAWYSIVGRWHESTDDAYVN----------GNV 61

Query: 62  ITLTAPFDGNVQANLVEQGQRVEAGQVLLRMDPATLEVQLRDALSAQLKARRTVQEMQDW 121
           + +T    G V +   + G  V AGQVLL+ DPA  EV L+   SA+ K  R+V++++  
Sbjct: 62  VEITPLVAGTVTSIGADDGDLVHAGQVLLQFDPADSEVALQ---SAEAKLARSVRQVRGL 118

Query: 122 DNGPTVTRARRSLRTVEMTAGNTQRKLTESENLFKRGIIPRNELDDLKQQTQQQQLDLAS 181
            +     +A+   R  E+     Q+     + L   G I   EL   +      Q  + S
Sbjct: 119 YSNVDSLKAQLETRQAELR--KAQQDFNRRKVLADSGAIAAEELSHARDDLSVAQAAVNS 176

Query: 182 ARSELQQAIDQGKGEYRQIADMELTNATVKYDALHKLLEGKEVKAPFSGIVVPPPGNNSP 241
           AR +L  +          + D  + ++     A    L    +    + +V P  G  + 
Sbjct: 177 ARQQLSTS--------SALVDDTVVSSHPDVMAAAADLRQAYLDHARTTLVAPVTGYVAK 228

Query: 242 QAGGNNTAPVQAGSKVSQGQVLFGLANIERLKIVAKVSELDINQLHQGQAVEVLGDGFDG 301
           +        VQ G ++  G     +  ++++ I A   E  + ++  GQ VE+  D +  
Sbjct: 229 RT-------VQLGQRLQPGTATMAVIPLDQVWIDANFKETQLREMRIGQPVEITADVYGS 281

Query: 302 E-RLTGSVSVVSGLAIAGDSQGSAQFP----------VTLSIP---KLTPQQLQ--RVRL 345
           E + +G+V  +     AG     A  P          +   +P    L+P QL+   +R+
Sbjct: 282 EVKYSGTVDSLG----AGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRI 337

Query: 346 GMSARLTIVTYNNAQAIVIPSQAIRADKTVE 376
           G+S  + +  ++ +   +      +A  T +
Sbjct: 338 GLSTVVEVDLHDQSGPTLAQQPPQKASYTTQ 368