Pairwise Alignments

Query, 904 a.a., NADH dehydrogenase from Pseudomonas simiae WCS417

Subject, 692 a.a., NADH-quinone oxidoreductase chain 3 from Xanthobacter sp. DMC5

 Score =  200 bits (509), Expect = 2e-55
 Identities = 194/715 (27%), Positives = 304/715 (42%), Gaps = 90/715 (12%)

Query: 1   MATIHVDGKALEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDTR 60
           MA I VDG  ++V     LLQAC + G++IP FC+H  L   G CR C V+         
Sbjct: 1   MAKIVVDGTEVDVPAEYTLLQACEAAGVEIPRFCFHERLSIAGNCRMCLVEVKGGPPKPT 60

Query: 61  GRIVMSCMT----PATDNTWISIDDEESKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQD 116
               M+       P  +   +       K  R  V+E+L+ NHP DCP+C++GG C LQD
Sbjct: 61  ASCAMAVKDLRPGPNGEPPVVLTKSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQD 120

Query: 117 MTVMTGHNERRYRFTKRTHQNQDLGPFISHEMNRCIACYRCVRFYKDYAGGTDLGVFGAH 176
             +  G +  R+   KR  +++ +GP +   MNRCI C RCVRF  + AG  DLG  G  
Sbjct: 121 QAMAYGADTSRFAENKRAVEDKYIGPLVKTSMNRCIQCTRCVRFSTEVAGVPDLGAIGRG 180

Query: 177 DNVYFGRVEDGVLESEFSGNLTEVCPTGVFTDKTHSERYNRKWDMQFAPSICHGCSSGCN 236
           +++      +  + SE  GN+ ++CP G  T K + + + R W++    SI    + G N
Sbjct: 181 EDMEITTYLEHAMRSEMQGNVADLCPVGALTHKPY-QFHARPWELVKTESIDVMDAVGSN 239

Query: 237 ISPGERYGELRRIENRFNGSVNQYFLCDRGRFGYG--YVNREDRPRQPLLAGGAKLSTDE 294
           I    R  E+ R   R N +VN+ ++ D+ R+ +    V R DRP           +  E
Sbjct: 240 IRIDTRGREVMRFLPRNNDAVNEEWISDKSRYVWDGLKVQRLDRPYVRKDGRLVPATWSE 299

Query: 295 ALDKAAELLRGRNIVGIGS---PRASLESNFALRELVGAEHFYSGIEAGELERIRLVLQV 351
           A    A  ++G     IG+     AS+E  FAL+ L+G +   + I+A + +  +L   +
Sbjct: 300 AFAAIAAKVKGTAPARIGALIGDLASVEEVFALKTLMG-KLGSANIDARQ-DGAKLDPAL 357

Query: 352 LNDSPLPVPNMRDIEDHDAIFVLGEDLTQTAARIALSLRQSVKGKAEDMADAMRVQPWLD 411
              S +  P +  IE  DAI ++G D    A+ I   +R+                 W  
Sbjct: 358 GRASYVFNPTIAGIEQADAILLVGSDPRHEASVINSRIRKR----------------WRQ 401

Query: 412 AAVKNIGQHALNPLFIASLAETKLD-DIAEECVHAAPDDLARIGFAVAHALDASAPAVEG 470
             +K              L  TK+D     + + A PD LA +  + A            
Sbjct: 402 GGLK------------IGLIGTKVDLTYTYDYLGAGPDSLADLAGSSA------------ 437

Query: 471 LDTEAVELAQRIADALLAAKRPLIIAGTSLGSK----ALIEAAANIAKAL-KLRDKNGSI 525
                        D L  A+RPL+I G    ++    A++  AA +A A+  ++D     
Sbjct: 438 -----------FGDILRKAERPLVIVGQGALARPDGAAVLSLAARVAVAVGAVKDGWNGF 486

Query: 526 SLVVPEANSLGL----AMLGGESLDAALQAVIDGKADAIVVLENDLYTRTDAAKVDAALD 581
            ++   A  +G     A+ G   LD A      G  D   ++  D        +V+ A  
Sbjct: 487 GVLHTAAARVGALDVGAVPGAGGLDVAAMTA-PGALDVAFLMGAD--------EVEVAPG 537

Query: 582 AAKVLIVADHQKTATSDRAHLVLPAATFAEGDGTLVSQEGRAQRFFQVFDPKYMDASILV 641
           A  V +     + A   RA ++LP A + E  G  V+ EGR Q     F  +        
Sbjct: 538 AFVVYLGTHGDRGA--HRADVILPGAAYPEKSGIYVNTEGRVQ-----FANRAAFPPGEA 590

Query: 642 HEGWRWLHALRSTLLNQPIDWTQLDHVTAAAAASAPQLARIVDAAPSAAFRIKGM 696
            E W  L AL S +L Q + +  +  + A   ++ P L  I +A  + A  +  +
Sbjct: 591 REDWAILRAL-SEVLGQTLPFDNMQALRAQLVSAYPHLGHIDEAVEADAGAVSAL 644