Pairwise Alignments

Query, 374 a.a., tRNA 2-thiouridylase from Pseudomonas simiae WCS417

Subject, 369 a.a., tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) from Variovorax sp. SCN45

 Score =  419 bits (1078), Expect = e-122
 Identities = 214/367 (58%), Positives = 263/367 (71%), Gaps = 14/367 (3%)

Query: 11  KKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTEYCTAMDDLADAQAVCDK 70
           K+R++VG+SGGVDS+V+A LL +QG+EV G+FMKNWE+DD +EYC++  D  DA +V D 
Sbjct: 3   KQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSEYCSSNIDFVDAASVADV 62

Query: 71  IGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAMMLGADLIA 130
           +GI++   NFAA+Y D VF  FL EYKAGRTPNPD+LCN EIKFKAFLD+AM LGA+ IA
Sbjct: 63  LGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKIA 122

Query: 131 TGHY--VRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGELEKPEVRRIAE 188
           TGHY  VRR D  G+ ELLKGLDP+KDQSYFLH +   Q++KTLFPVGEL K EVRRIAE
Sbjct: 123 TGHYARVRRNDATGKHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTEVRRIAE 182

Query: 189 KHGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGEIKTTEGEVIGRHHGLMYHTIGQR 248
           + GL  AKKKDSTGICFIGER F DFL +Y+  +PG IK   G  +G H GL ++T+GQR
Sbjct: 183 EIGLPNAKKKDSTGICFIGERPFRDFLNRYISKEPGPIKDDRGRKLGEHQGLSFYTLGQR 242

Query: 249 QGLGIGGLKDAGEE-------PWYVLIKDLEHNELIVGQGNEHPLLFSGALLASEIYWVN 301
           QGLGIGG+K+ G +       PW+V  KD+E N L V QG++HP L S  L A +  WV+
Sbjct: 243 QGLGIGGVKEKGAQRGSGDHSPWFVARKDVEKNTLWVVQGHDHPWLLSSELKADDASWVS 302

Query: 302 PIDLSTPRRLTAKVRYRQSDQPCTLEKTATGYRAIFD----DPQRAVTPGQSVVFYDGEI 357
             +        +K RYRQ+D  C +     G +A F     +PQ AVTPGQS V YDGE 
Sbjct: 303 G-EAPAAGSYGSKARYRQADAACEMGAGEGGNQAAFSLRFGEPQWAVTPGQSAVLYDGER 361

Query: 358 CLGGGVI 364
           CLGGGVI
Sbjct: 362 CLGGGVI 368