Pairwise Alignments

Query, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

Subject, 480 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  378 bits (971), Expect = e-109
 Identities = 209/477 (43%), Positives = 298/477 (62%), Gaps = 17/477 (3%)

Query: 4   SETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASG 63
           S ++ + DDD +IR VL +AL + G   +S  +A  +   +++   D++I+D+ MP  + 
Sbjct: 3   SGSILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDENA 62

Query: 64  LDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVALVKRANQHA 123
            DLL RI++  P LPVI+M+A +   +A+ + + GA+EYLPKPFD+ E +++V RA    
Sbjct: 63  FDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRALAEP 122

Query: 124 QEQQNQEAPPALTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALH 183
           ++       P       ++G +PAMQE++R + RL  +++TV+I GESGTGKELVA ALH
Sbjct: 123 KKGDGHHHAPEEQDNIPLVGRSPAMQEIYRLLARLMQTDLTVMIAGESGTGKELVARALH 182

Query: 184 RHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIG 243
            +  R   PF+A+NMAAIP+DL+ESELFGHEKG+FTGA     GRFEQA+GGTLFLDEIG
Sbjct: 183 DYGKRRTGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRNPGRFEQAEGGTLFLDEIG 242

Query: 244 DMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLN 303
           DMP + QTRLLRVL  GE+  VGG TP+K DVRIIAAT+++L TL+  G FREDLF RLN
Sbjct: 243 DMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGLFREDLFFRLN 302

Query: 304 VIRIHIPRMSDRREDIPTLARHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLEN 363
           V+ + +P + +R ED+P L RHF  +A +E  +  K + S   + LK   WPGNVR+LEN
Sbjct: 303 VVPLRLPPLRERSEDVPDLVRHFFLQAERE-GLPAKQIDSAALDRLKRYRWPGNVRELEN 361

Query: 364 TCRWITVMASGR-------EVHISDLPPELLSL--PQDSAPVTNWEQALRQWADQALARG 414
             R +  +           E  +S+  P +LS   P D+    + E+ L  +       G
Sbjct: 362 LVRRLAALYPQEVITPAIIEAELSEPMPNMLSEEGPVDATLAASVERHLNTYFS---GFG 418

Query: 415 QS----NLLDSAVPAFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKV 467
           ++     L    +   E  ++  AL  T G +  AA LLG  RNTL +KI++L ++V
Sbjct: 419 ENLPPPGLYHRILKDVEYPLLSAALAATRGNQIKAAELLGLNRNTLRKKIRDLDIQV 475