Pairwise Alignments

Query, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

Subject, 463 a.a., sigma-54-dependent Fis family transcriptional regulator from Magnetospirillum magneticum AMB-1

 Score =  308 bits (789), Expect = 3e-88
 Identities = 175/468 (37%), Positives = 282/468 (60%), Gaps = 18/468 (3%)

Query: 7   VWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGA--SGL 64
           + IVDD+  IR ++   L+ EG  T+   ++D  +  +  ++P+++I DI + G+   GL
Sbjct: 5   ILIVDDEADIRALIAGILEDEGHNTREAANSDEALEGIRARRPNLVIQDIWLQGSRLDGL 64

Query: 65  DLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVALVKRANQHAQ 124
           ++L  I+  +P +PV++++ H ++++AV + + GA++++ KPF  D  + +V+RA + A+
Sbjct: 65  EVLDAIKRDNPEVPVVMISGHGNIETAVQAIKQGAYDFIEKPFKADRLLLVVERAVEAAR 124

Query: 125 -EQQNQEAPPALTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALH 183
             ++N+E         E++G A  + +V +A+ ++  +N  VLI G +G+GKE+VA  +H
Sbjct: 125 LRRENEELRLRSGSGGELVGNAVGILQVRQAVEKVGPTNSRVLITGPAGSGKEVVARQIH 184

Query: 184 RHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIG 243
             S RA  PF+ LN AA+  D ME ELFG E G     +  + G FEQA GGTL LDE+ 
Sbjct: 185 ARSRRADGPFVVLNCAAMHPDRMEMELFGTEHGLDGPDSPRKVGTFEQAHGGTLLLDEVA 244

Query: 244 DMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLN 303
           DMP +TQ +++RVL D  F R+GG   V+VDVR+IA+T+++L++ + AG FREDL++RLN
Sbjct: 245 DMPLETQGKIVRVLQDQMFERIGGGKRVEVDVRVIASTNRDLQSEMTAGHFREDLYYRLN 304

Query: 304 VIRIHIPRMSDRREDIPTLARHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLEN 363
           V+ + +P + DRREDIP LARHF++ AA    V+P+++  +    L+   WPGNVRQL N
Sbjct: 305 VVPVKMPSLRDRREDIPLLARHFMTMAAAAAGVQPRMVGEDAMAALQAYDWPGNVRQLRN 364

Query: 364 TCRWITVMASG--REVHISD-LPPELLSLPQDSAPVTNWEQALRQWADQALARGQSNLLD 420
              W+ +MA G  RE   +D LP E+ ++   +  V  WE++         +   +  L 
Sbjct: 365 VMDWLLIMAPGDQREAIRADMLPGEIGAI---TPAVLRWEKS---------SEIMTLPLR 412

Query: 421 SAVPAFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVD 468
            A   FER  +   +   AG     A  +G  R+ L RK+K LG+  D
Sbjct: 413 EARELFEREYLLAQVNRFAGNISRTAAFVGMERSALHRKLKLLGVNTD 460