Pairwise Alignments

Query, 917 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  325 bits (833), Expect = 1e-92
 Identities = 203/545 (37%), Positives = 302/545 (55%), Gaps = 26/545 (4%)

Query: 255  EDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE 314
            EDV Q   T E Q    D A     +A+R KS+FLANMSHEIRTP+N I+G  HL  K++
Sbjct: 694  EDVTQARATAEAQARAKDAAE----DAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTD 749

Query: 315  LTPRQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPA 374
            L PRQ DY+  I++S  +LLGIIN+ILDFSKIEAGKL +++   +L  +L++   +++  
Sbjct: 750  LDPRQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEK 809

Query: 375  AHAKQLELVSLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDS 434
            A AK LEL+  V    PL L+GD LRL Q+L N  +NA+KFT  G IV    + ++    
Sbjct: 810  ATAKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPD 869

Query: 435  VQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGV 494
            V LR  V+DTGIGL+ +    LFQ+FSQAD S +R+ GGTGLGL ISK+L E MGG +GV
Sbjct: 870  VMLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGV 929

Query: 495  DSTPGEGSEFWISLNLPKTRDDVEDLPSAPLLGHRVAVLENHELARQALQHQLEDCGLEV 554
            DS PG+GS FW +  L K +     +P A L G R+ V++++E AR  L   L     EV
Sbjct: 930  DSVPGQGSTFWFTARLGKGKPRAPLIPEAELQGRRMLVVDDNENARAVLVDMLSAMSFEV 989

Query: 555  TPFNS----LESLTNGITSAHQTEQAIDLAVLGVTANDIPPERLNQHLWDLEHLGCKVLV 610
               +S    L+++ + +         +D  +  +   ++  +  +  L    HL   ++V
Sbjct: 990  DAVDSGAKALDAIRDAVLDLPYDVVFLDWQMPDMDGLEVAEQIHSIRLPFPPHL---IMV 1046

Query: 611  LCPTTEQMLFNQSVPNPNSQLQAKPACTRKLRRALSDLISPRPSRSEPGEPLSS------ 664
                 E+++      +    L  KP     L  ++  + +    R E  E +S       
Sbjct: 1047 TAYGREEIIKGAQAADIGEVL-IKPVSPAALFDSIMRVFASDQRRDE-AEDVSEGGSVDH 1104

Query: 665  ---RAPRVLCVDDNPANLLLVQTLLEDMGARVRAVESGYAAIDAVKQDTFDLVLMDVQMP 721
               R  +VL V+DN  N  +   +L D G  V   ++G  A++  +   +DL+LMD+QMP
Sbjct: 1105 AALRGLKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKARAGVYDLILMDMQMP 1164

Query: 722  GMDGRQSTEAIRQWESERSGTPLPVVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQ 781
             MDG  +T  IR+         LP++A+TA+AM  ++   L++GM+D++ KPI    +  
Sbjct: 1165 VMDGVTATREIRR----LGHVDLPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMFS 1220

Query: 782  VVLKW 786
             + +W
Sbjct: 1221 TISRW 1225



 Score = 59.3 bits (142), Expect = 1e-12
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 652  RPSRSEPGEPLSSRAP----RVLCVDDNPANLLLVQTLLEDMGARVRAVESGYAAIDAVK 707
            R  + +P  PL   A     R+L VDDN     ++  +L  M   V AV+SG  A+DA++
Sbjct: 944  RLGKGKPRAPLIPEAELQGRRMLVVDDNENARAVLVDMLSAMSFEVDAVDSGAKALDAIR 1003

Query: 708  QDT----FDLVLMDVQMPGMDGRQSTEAIRQWESERSGTPLPVVALTAHAMANEKRALLQ 763
                   +D+V +D QMP MDG +  E I    S R   P  ++ +TA+      +    
Sbjct: 1004 DAVLDLPYDVVFLDWQMPDMDGLEVAEQI---HSIRLPFPPHLIMVTAYGREEIIKGAQA 1060

Query: 764  SGMDDYLTKPISERQLAQVVLKWTGLALRNQGPERVADG 802
            + + + L KP+S   L   +++      R    E V++G
Sbjct: 1061 ADIGEVLIKPVSPAALFDSIMRVFASDQRRDEAEDVSEG 1099