Pairwise Alignments

Query, 917 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  334 bits (857), Expect = 2e-95
 Identities = 237/672 (35%), Positives = 343/672 (51%), Gaps = 26/672 (3%)

Query: 259  QNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTPR 318
            Q++   ++    L  A++ A +A+R+KS+FLANMSHEIRTP+N I+G +HL  K+ELTPR
Sbjct: 860  QDVSAEKLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTPR 919

Query: 319  QLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAK 378
            Q DY+  I+ +  +LLGIIN+ILDFSKIEAGKL ++   F L  +L +   +L     AK
Sbjct: 920  QHDYVKKIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAK 979

Query: 379  QLELVSLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLR 438
             LELV  +  + P  LVGD LRL QIL N  +NA+KFT  G I   A +++  E  V L 
Sbjct: 980  SLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSETEVLLY 1039

Query: 439  ISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTP 498
             +V+DTGIG++++    LFQ+F QAD S +R+ GGTGLGL ISKRL E MGGE+GV+S  
Sbjct: 1040 FAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEY 1099

Query: 499  GEGSEFWISLNLP-KTRDDVEDLPSAPLLGHRVAVLENHELARQALQHQLEDCGLEVTPF 557
            G+GS FW +  +   T      LPS  L G RV V+++++ AR  L   +     +VT  
Sbjct: 1100 GKGSTFWFTARMGIGTVRKRRLLPSPDLRGRRVLVVDDNDNARTVLADLMAGMTFQVTTR 1159

Query: 558  NSLESLTNGITSAHQTEQAIDLAVLGVTANDIPPERLNQHLWDLE-HLGCKVLVLCPTTE 616
             S     + +  A       ++ +L      +       HL  L      ++L++     
Sbjct: 1160 ASGLEAVDEVKRAAMAGTPYEIVLLDWRMPGMDGIETAHHLMALGLDPAPRLLMVTAYGR 1219

Query: 617  QMLFNQSVPNPNSQLQAKPACTRKLRRALSDLISPRPS--RSEPGEPLSS-------RAP 667
            + + N         +  KP     L   +  L   +P+  R   G   SS       R  
Sbjct: 1220 EEVLNLITEAGIEDVLIKPVSASILFDTIMRLFGCQPAEPRDVDGGHSSSEMHLETIRGA 1279

Query: 668  RVLCVDDNPANLLLVQTLLEDMGARVRAVESGYAAIDAVKQDTFDLVLMDVQMPGMDGRQ 727
            R+L V+DN  N  +   LL D G +V   + G  A+  V+++ +D+VLMD+QMP MDG  
Sbjct: 1280 RILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVLMDMQMPVMDGVA 1339

Query: 728  STEAIRQWESERSGTPLPVVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVVLKWT 787
            +T  IR+         LP+VA+TA+AM  ++   L +GM+D++TKPI   QL   +L+W 
Sbjct: 1340 ATREIRRL---GQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAALLRW- 1395

Query: 788  GLALRNQGPERVADGLGPG--------VQLPVLDHEEGLRLAAGKADLAADMLAMLLASL 839
             +A R+  P        P          ++  LD   GLR   GK  L    L    A  
Sbjct: 1396 -IAPRH-SPAAAHGASAPSETGEEHSIPRIDGLDTTTGLRRVQGKTRLYLTSLRKFAAGR 1453

Query: 840  EADRLAITIARDANDNNALIERVHRLHGATRYCGVPQLRAACHRAETLLKQDDAKAQHAL 899
            ++    I  A +A+D +      H   G     G  +++      E  L  D    Q   
Sbjct: 1454 KSVAGDIRAALEADDWSTAERLAHTTKGLAGMIGADEVQRRAADLEAAL-CDKLSRQEVE 1512

Query: 900  DELDMAIARLAS 911
            D LD   A LA+
Sbjct: 1513 DLLDAMAAPLAA 1524