Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  124 bits (312), Expect = 7e-34
 Identities = 69/155 (44%), Positives = 94/155 (60%), Gaps = 11/155 (7%)

Query: 20  MYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRLLID 79
           +Y +HH WLHGWL+ KL  +  AAD+AHD F+R+L      QI EPR +LAT A  L+ID
Sbjct: 13  IYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQILEPRDYLATIARGLVID 72

Query: 80  GARRRRIEKAYMEALVIQCEDAGMPDPAAIH-----VALQALERIAEMLAGLPAKAREAF 134
             RR  IE+AY + L      A  PD  AI      + ++ L  + + LAGL  +AR  F
Sbjct: 73  RYRRHAIEQAYKQTL------AERPDATAISEEDKAIIIETLVAVDKALAGLGERARRIF 126

Query: 135 LLSRLDGLTYSEIATRLDVSASTVKNYISSALVHC 169
           +LS+++GLTY +IA  L VS +TVK ++  AL  C
Sbjct: 127 MLSQVEGLTYQQIADELQVSLTTVKKHMIRALTEC 161