Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 95.1 bits (235), Expect = 5e-25
 Identities = 57/150 (38%), Positives = 84/150 (56%)

Query: 20  MYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRLLID 79
           M   ++  L  +L  KLG  Q A D+ HDA++RVL  +    I++PRAFL  TA  L+ID
Sbjct: 1   MLENYYRELVCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVID 60

Query: 80  GARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAREAFLLSRL 139
           G RR  + +     ++   E      P   H   Q LE +   LA LP   R++FLL +L
Sbjct: 61  GHRRNALRQVEPLDVLDAEERFASSSPHTHHDHGQRLELLERALAELPPACRDSFLLRKL 120

Query: 140 DGLTYSEIATRLDVSASTVKNYISSALVHC 169
           +GLT+ +IA RL +S + V+ +I +A+ HC
Sbjct: 121 EGLTHLQIAERLSISRAMVEKHIVNAMKHC 150