Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  134 bits (336), Expect = 1e-36
 Identities = 71/162 (43%), Positives = 106/162 (65%), Gaps = 11/162 (6%)

Query: 14  QQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTA 73
           QQ L  +Y +HHGWL GWLR++LG  +HAAD+A D F+R+L+       KE R++LA  A
Sbjct: 8   QQQLHLLYRDHHGWLQGWLRRRLGDREHAADVAQDTFLRLLVSGRFPGDKESRSYLAQIA 67

Query: 74  GRLLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIH-----VALQALERIAEMLAGLPA 128
             L+ID  RR RIE+AY+E++      A +P+P +       + L+ L +I  ML  +P 
Sbjct: 68  RNLVIDQWRRLRIERAYLESI------AHLPEPESPSLETRALILETLMQIDAMLDRMPD 121

Query: 129 KAREAFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHCY 170
             R+AFLLS+ +GL+Y++IA RL V+ S+V+ Y++ A+V CY
Sbjct: 122 NVRQAFLLSQFEGLSYAQIAERLGVTVSSVQKYMTRAIVACY 163