Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  135 bits (340), Expect = 4e-37
 Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 1/163 (0%)

Query: 11  SVRQQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLA 70
           S    T+  +Y  HH WL GWLR++LGC   AADLA D ++R+L   E  Q+ EPRAFLA
Sbjct: 9   SALTSTVEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLA 68

Query: 71  TTAGRLLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKA 130
           T A R+L +  RR+ +E+AY++AL  Q  +   P      +  + L  +  +L GLP   
Sbjct: 69  TVAKRVLCNHFRRQELERAYLQALA-QVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLV 127

Query: 131 REAFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHCYHSL 173
           + AFLL+++DGL   EIA  L +S +TVK Y++ A + CY +L
Sbjct: 128 KRAFLLAQVDGLGQGEIARELGISLATVKRYLNKAAMRCYFAL 170