Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 84.7 bits (208), Expect = 7e-22
 Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 6/145 (4%)

Query: 28  LHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRLLIDGARRRRIE 87
           L  +L  +LG  Q A D+AHDA++RVL     +QI+ PRAFL  TA  L++D  RR+ + 
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVR 67

Query: 88  KAYMEALVIQCEDAGMPDPAAIHVALQALERIAEM---LAGLPAKAREAFLLSRLDGLTY 144
           +A  E L     D+ +      H  LQ  +R+A M   L  L    R++FLL +++GL++
Sbjct: 68  QA--EPLDALDADSRLHSSELQH-DLQLDQRLALMQKALDELSRPCRDSFLLRKIEGLSH 124

Query: 145 SEIATRLDVSASTVKNYISSALVHC 169
            +IA RL +S S V+ +I +A+ HC
Sbjct: 125 QQIAERLGISRSLVEKHIVNAMKHC 149