Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score =  130 bits (328), Expect = 9e-36
 Identities = 69/154 (44%), Positives = 99/154 (64%), Gaps = 2/154 (1%)

Query: 17  LTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEP-QQIKEPRAFLATTAGR 75
           L A+Y EH GWL  WLR+++G +  AADL+ D F+R+L  A+P   I+EPRA+L T   R
Sbjct: 12  LPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKR 71

Query: 76  LLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAREAFL 135
           LL +  +RR +E+AY++AL  Q  +  +P P    V L+ L+ + E+L GL    R+AFL
Sbjct: 72  LLSNFHQRRSLEQAYLDALA-QLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRKAFL 130

Query: 136 LSRLDGLTYSEIATRLDVSASTVKNYISSALVHC 169
            S+L+GL Y+EI  RL V   +VK Y++ A  HC
Sbjct: 131 WSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHC 164